View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20911_low_2 (Length: 444)
Name: NF20911_low_2
Description: NF20911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20911_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 2e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 4 - 166
Target Start/End: Original strand, 34273644 - 34273806
Alignment:
| Q |
4 |
ggaggttgcagagtttcttgggctggagaggatatgcatgatggaaaactcccacccaaatgcaattactattagtaagctagctacttactccaaaaat |
103 |
Q |
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| T |
34273644 |
ggaggttgcagagtttcttgggctggagaggatatgcatgatggaaaactcccacccaaatgcaattactattagtaagatagctacttactccaaaaat |
34273743 |
T |
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| Q |
104 |
taataaatatcgcattcaattatccactatcttccaatctattcaactacaaatacattcgat |
166 |
Q |
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| T |
34273744 |
taataaatatcgcattcaattatccactatcttccaatctattcaactacaaatacattcgat |
34273806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 217 - 428
Target Start/End: Original strand, 34273821 - 34274037
Alignment:
| Q |
217 |
cgaagccaaaatcataatgacatcaaacagaatagtattctctaa-aaggttgacacctcttagtattctctaatcctctgtcaagtgttcatatattta |
315 |
Q |
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| T |
34273821 |
cgaagccaaaatcataatgacatcaaacagaatagtattctctaacaaggttgacacctcttagtattctctaatcctctgtcaagtgttcatatattta |
34273920 |
T |
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| Q |
316 |
aataaaagaag----nnnnnnntgtgtgtnnnnnnncttagtgtaagatttccttaatcaagttacagaaaatggggccaaaagtaaagcaagcaagcac |
411 |
Q |
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| T |
34273921 |
aataaaagaagaaaaaaatgtgtgtgtgtgtgtgggtttagtgtaagatttccttaatcaagttacagaaaatggggccaaaagtaaagcgagcaagcac |
34274020 |
T |
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| Q |
412 |
atcaagaaagaagttcc |
428 |
Q |
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| T |
34274021 |
atgaagaaagaagttcc |
34274037 |
T |
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