View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20911_low_5 (Length: 350)
Name: NF20911_low_5
Description: NF20911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20911_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 45 - 340
Target Start/End: Original strand, 33171097 - 33171400
Alignment:
| Q |
45 |
ctaataatggttagtgattcgttgaggtt--------accgacttttaatctaattcgctattaagatcagatttgtacatttagaagctgggatgggcg |
136 |
Q |
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| T |
33171097 |
ctaataatggttagtgattcgttgaggtttcgagagtaccgacttttaatctaatttgctattaagatcagatttgtacatttagaagctgtgatggccg |
33171196 |
T |
|
| Q |
137 |
agatcctccgatccataggaaaagtcgctctacggatggtttccacacaccggagattaaatagaggggatcagcctttgcagcatccgttttcattctg |
236 |
Q |
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| T |
33171197 |
agatcctccgatccataggaaaagtcgctctacggatggtttccacacaccggagattaaatagaggggatcagcctttgcagcatccgttttcattctg |
33171296 |
T |
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| Q |
237 |
aaaagatccgagtaatgattcaagacactctgaacaactagacggagctgcacttcggacgcattagtttgaaatgcatttctgagctcttcattccgcc |
336 |
Q |
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| T |
33171297 |
aaaagatccgagtaatgattcaagacactctgaacaactagacggagctgcacttcggacgcattagtttgaaatgcatttctgagctcttcattccgcc |
33171396 |
T |
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| Q |
337 |
tatg |
340 |
Q |
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|||| |
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| T |
33171397 |
tatg |
33171400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 319
Target Start/End: Original strand, 25355778 - 25355986
Alignment:
| Q |
111 |
tgtacatttagaagctgggatgggcgagatcctccgatccataggaaaagtcgctctacggatggtttccacacaccggagattaaatagaggggatcag |
210 |
Q |
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| T |
25355778 |
tgtacatttagaatttgtgatggacgagatcctccgatccaaagaaaaaggcgttcgaccggtgatttccatacgccagagattaaatagaaaacatcag |
25355877 |
T |
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| Q |
211 |
cctttgcagcatccgttttcattctgaaaagatccgagtaatgattcaagacactctgaacaactagacggagctgcacttcggacgcattagtttgaaa |
310 |
Q |
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|||||||||| || | ||||||||||||||||| ||||| || |||||| ||||| ||||| |||| | || || | || || ||||||||||| || |
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| T |
25355878 |
cctttgcagcttcagctttcattctgaaaagatttgagtattggttcaagctactctcaacaagtagatgaagttgtatatcagatgcattagtttgcaa |
25355977 |
T |
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| Q |
311 |
tgcatttct |
319 |
Q |
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||||||||| |
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| T |
25355978 |
tgcatttct |
25355986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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