View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20911_low_7 (Length: 321)
Name: NF20911_low_7
Description: NF20911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20911_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 45333692 - 45333836
Alignment:
| Q |
1 |
tgtccgttagtccctgcaatacaa----tcaaaagtgaggtattttatcttgccacgaggaacatatcatattataggcttgatttcttgctccctaagt |
96 |
Q |
| |
|
|||| |||||||||||||||||| |||| |||||||||||||||| | | | |||||| ||||||||| ||||||||||| ||||||| ||| |
|
|
| T |
45333692 |
tgtctgttagtccctgcaatacacacagtcaatagtgaggtattttatcatccaatgaggaa-----catattataagcttgatttctagctccctgagt |
45333786 |
T |
|
| Q |
97 |
tagagcaaaatttatggttcatatactaggaaaataaaaccaggttgatt |
146 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
45333787 |
tagagcaaaatttaaggttcatatactaggaaaacaaaaccaggttgatt |
45333836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 45334126 - 45334186
Alignment:
| Q |
193 |
agaaattatagaacaatgtatttcgatagctcaccttcacagtaagacaacacctgcaata |
253 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45334126 |
agaaataacagaacaatgtatttcgatagctcaccttcacagtaagacaacacctgcaata |
45334186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 209 - 300
Target Start/End: Original strand, 20788898 - 20788993
Alignment:
| Q |
209 |
tgtatttcgatagctcaccttcacagtaagacaacacctgcaatagtaaaca----aagagaatcagtttatcaatcgattttacacccaaacaga |
300 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| || ||||| |||||||||| |||| ||||| |||||||||| ||||||| |
|
|
| T |
20788898 |
tgtatttcaatagctcaccttcacagtaagacaacacctgcaacagcaaacaaaggaagagaatcaatttagcaatccattttacaccaaaacaga |
20788993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 11271496 - 11271381
Alignment:
| Q |
25 |
tcaaaagtgaggtattttatcttgccacgaggaacatatcatattataggcttgatttcttgctccctaagttagagcaaaatttatggttcatatacta |
124 |
Q |
| |
|
||||||||||||||||||||| | | | ||||||||||||||| ||||||||||| ||||||| ||||||| ||||| ||| |||||||||| | |
|
|
| T |
11271496 |
tcaaaagtgaggtattttatcatccaatgaggaacatatcataa-----gcttgatttctagctccctgagttagatcaaaaattaaggttcatata-ga |
11271403 |
T |
|
| Q |
125 |
ggaaaataaaaccaggttgatt |
146 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
11271402 |
ggaaaataaaaccaggttgatt |
11271381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University