View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20911_low_8 (Length: 306)
Name: NF20911_low_8
Description: NF20911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20911_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 20 - 296
Target Start/End: Complemental strand, 14282433 - 14282157
Alignment:
| Q |
20 |
gccattgtctctttctttactctatatcgaacaaagagtagtaatagttttcagtttcagataatgaggagccgtgattcgaggctgaaggcgacaaatg |
119 |
Q |
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| T |
14282433 |
gccattgtctctttctttactctatatcgaacaaagagtagtaatagttttcagtttcagataatgaggagccgtgattcgaggctgaaggcgacaaatg |
14282334 |
T |
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| Q |
120 |
agttgcttaacaacatgcgtgtgattaagtttcaagcgtgggaagagtacttcggtaacaagattcgacagtttcgtgaagccgaacatggatggattgg |
219 |
Q |
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| T |
14282333 |
agttgcttaacaacatgcgtgtgattaagtttcaagcgtgggaagagtacttcggtaacaagattcaacagtttcgtgaagccgaacatggatggattgg |
14282234 |
T |
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| Q |
220 |
gaaattcttgtactattttgcagttaacatgggaattctgggtactgcttcaataactgtatctgttcttacctttg |
296 |
Q |
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| T |
14282233 |
gaaattcttgtactattttgcagttaacatgggaattctgggtactgcttcaataactgtagctgttcttacctttg |
14282157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 44 - 296
Target Start/End: Complemental strand, 14320558 - 14320306
Alignment:
| Q |
44 |
tatcgaacaaagagtagtaatagttttcagtttcagataatgaggagccgtgattcgaggctgaaggcgacaaatgagttgcttaacaacatgcgtgtga |
143 |
Q |
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| T |
14320558 |
tatcgaacgaagagtagtaatagtttccagtttaagataatgacgagccgcgattcgaggatgaaggcgacaaacgagttacttaacaacatgcgtgtga |
14320459 |
T |
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| Q |
144 |
ttaagtttcaagcgtgggaagagtacttcggtaacaagattcgacagtttcgtgaagccgaacatggatggattgggaaattcttgtactattttgcagt |
243 |
Q |
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| T |
14320458 |
ttaagtttcaagcgtgggaagagtactttggtaacaaaattcaacagtttcgcgaagctgagcatggatggattgcgaaattcttgtactattttgcagt |
14320359 |
T |
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| Q |
244 |
taacatgggaattctgggtactgcttcaataactgtatctgttcttacctttg |
296 |
Q |
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| T |
14320358 |
taacataggagttttgggtactgccccattagctgtaactgttcttacctttg |
14320306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 43 - 253
Target Start/End: Complemental strand, 14304168 - 14303958
Alignment:
| Q |
43 |
atatcgaacaaagagtagtaatagttttcagtttcagataatgaggagccgtgattcgaggctgaaggcgacaaatgagttgcttaacaacatgcgtgtg |
142 |
Q |
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| T |
14304168 |
atatcgatcgaagaatagtaatgtttttcagtttcggataatgatgagccgcgattcgagaatgaagtcaacgaatgagttgcttaacaacatgcgtgtg |
14304069 |
T |
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| Q |
143 |
attaagtttcaagcgtgggaagagtacttcggtaacaagattcgacagtttcgtgaagccgaacatggatggattgggaaattcttgtactattttgcag |
242 |
Q |
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| T |
14304068 |
attaaatttcaagcgtgggaagagtacttcgggaacaagattcaacagtttcgtgaagccgaacatggatggattgggaaattcttgtactattttgctg |
14303969 |
T |
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| Q |
243 |
ttaacatggga |
253 |
Q |
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| T |
14303968 |
tgaacatggga |
14303958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 41 - 247
Target Start/End: Complemental strand, 25885243 - 25885037
Alignment:
| Q |
41 |
ctatatcgaacaaagagtagtaatagttttcagtttcagataatgaggagccgtgattcgaggctgaaggcgacaaatgagttgcttaacaacatgcgtg |
140 |
Q |
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||||||||||| ||||||||||| | |||||||||||||| |||| || || ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25885243 |
ctatatcgaaccaagagtagtaacaactttcagtttcagatgatgacaagtcgcgattcgaggatgaaggcgacaaatgagttgcttaacaacatgcgtg |
25885144 |
T |
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| Q |
141 |
tgattaagtttcaagcgtgggaagagtacttcggtaacaagattcgacagtttcgtgaagccgaacatggatggattgggaaattcttgtactattttgc |
240 |
Q |
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| T |
25885143 |
tgattaagtttcaagcttgggaagagtatttcggtaacaagattaaacagtttcgtgaatccgagcatggatggattgggaaattcatgtactattttgc |
25885044 |
T |
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| Q |
241 |
agttaac |
247 |
Q |
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|||||| |
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| T |
25885043 |
tgttaac |
25885037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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