View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20912_high_1 (Length: 432)
Name: NF20912_high_1
Description: NF20912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20912_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 14 - 415
Target Start/End: Original strand, 9736142 - 9736541
Alignment:
| Q |
14 |
agattgagcagagattttactgggtgacaatcctctaatgtgatatttgtgatgcatatgatacattttatttgacacaacttcaacatttcctacaaga |
113 |
Q |
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| T |
9736142 |
agatggagcagagattttactgggtgacaatcctctaatgtgatatttgtgatgcatatgatacattttatttgacacaacttcaacatttccaatcaga |
9736241 |
T |
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| Q |
114 |
gcactttataagtatacccttattcagtaatacttagtagccttattagcttgaaaatttaaagtgttcannnnnnnnnc-cgcataagttgaaccaact |
212 |
Q |
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| T |
9736242 |
gcactttataagtatacccttattcagtaatacttagtagccttattagcttgaaaatttaaagtattcatttttttttttcgcataagttgaaccaact |
9736341 |
T |
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| Q |
213 |
aaagacatatgggagaagctnnnnnnnccaaatgatatggaattgtaagtgtaaattattgtttaaagataaaatatatatatacatacctgttaatcaa |
312 |
Q |
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| T |
9736342 |
aaagacatatgggagaagctaaaaaaaccaaatgatatggaattgtaagtgtaaattattgtttaaagataaaatatatatatac----ctgttaatcaa |
9736437 |
T |
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| Q |
313 |
ggaaatcacggttattaaagtagataatttattgctaatgaaccaaacatgtacttggttgtttgtgttgg-nnnnnnngcttctgaagtcagtagtaac |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
9736438 |
ggaaatcacggttattaaagtagataatttattgctaatgaaccaaacatgtacttggttgtttgtgttggttttttttgcttctgaagtcagtagtaac |
9736537 |
T |
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