View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20912_high_2 (Length: 343)
Name: NF20912_high_2
Description: NF20912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20912_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 48925504 - 48925839
Alignment:
| Q |
1 |
aatcccaagttctttcatctcaccgacaatcctgtaagcatcatcgatccgcattgaccagcagtaagcactaacaacagcattataagtaggtgcttcc |
100 |
Q |
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| T |
48925504 |
aatcccaagttctttcatctcaccgacaatcctgtaagcatcatcgatccgcattgaccagcagtaagcactaacaacagcattataagtaggtgcttcc |
48925603 |
T |
|
| Q |
101 |
ggcggaaacccactagccttagatttttcaaagaattcaaaagcttcatccattctactaccattaccaagaccagtaataaaagtacaatatatatgag |
200 |
Q |
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| T |
48925604 |
ggcggaaacccactagccttagatttttcaaagaattcaaaagcttcatccattctactaccattaccaagaccagtaataaaagtacaatatatatgag |
48925703 |
T |
|
| Q |
201 |
gactaggatttacattctttgatagcatgtcatgataaataccaatagcctcgtcatactttttcgccttacaataagcattgatgattataccataagt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48925704 |
gactaggatttacattctttgatagcatgtcatgataaataccaatagcctcgtcatactttttcgccttacaataagcattgatgattataccataagt |
48925803 |
T |
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| Q |
301 |
aaccacatcaggctgaaaaccatcatccttcatctc |
336 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
48925804 |
aaccacatcaggctgaaaaccatcatccttcatctc |
48925839 |
T |
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