View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20912_high_4 (Length: 269)
Name: NF20912_high_4
Description: NF20912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20912_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 149 - 251
Target Start/End: Complemental strand, 77542 - 77440
Alignment:
| Q |
149 |
accttacggatagaacggagggggtgcgagagaaatatctggtggtagatagagaacgaacaagcgccgctctttccattgaagttgaattactactgca |
248 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
77542 |
accttgcggatagaacggagggggtgcgagagaaatatctggtggtagatagagaacgaacaagcgccgctctttccattgaagttgaattactactgca |
77443 |
T |
|
| Q |
249 |
act |
251 |
Q |
| |
|
||| |
|
|
| T |
77442 |
act |
77440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 77690 - 77593
Alignment:
| Q |
1 |
atacctggagaagaaacgagggaagctctggtggagaaatggttgcggttacgaaagtaaaagagtggacgagaagtagatgaagaaagcaatcttgt |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
77690 |
atacctggagaagaaacgagggaagctctggtggagaaatggttgcggttacgaaagtaaaagagtggacgagaagtagatgaagaaagcaatcttgt |
77593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University