View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20912_low_2 (Length: 393)
Name: NF20912_low_2
Description: NF20912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20912_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 42466711 - 42467085
Alignment:
| Q |
1 |
atcaaagagaggtagttcatgcttcagctttagtaaattgcgtctaaaatgtgaagttgaaatatgaatcatccaatcttgatacaatataggtcaacaa |
100 |
Q |
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| T |
42466711 |
atcaaaaagaggtagttcatgcttaagctttagtaaattgcgtctaaaatgtgaagttgaaatatgaatcatccaatcttgatacaatataggtcaacaa |
42466810 |
T |
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| Q |
101 |
ctgcataattttgtgatccaaattcaaccttttttcttgcataattaatgtgttgcatcatttgtcattggctttagtgatatcgtacttacaatgtgat |
200 |
Q |
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| T |
42466811 |
ctgcatgattttgtgatccaaattcaaccttttttcttgcataattaatgtgttgcatcatttgtcattggcttgagtgatatcatacttacaatgtgat |
42466910 |
T |
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| Q |
201 |
ttgttaataaaaaattgaatttcttagagtaccttgcgtgagaagtgaaggatttcgattctctttccaaggaaatggatattggttattggtgtacgtg |
300 |
Q |
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| T |
42466911 |
ttgttgataaaaatttgaatttcttagagtaccttgcgtgagaagtgaaggatttcgattctctttccaaggaaatggatattggttattggtgtacgtg |
42467010 |
T |
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| Q |
301 |
atgaatgtgggaggtggaggtgatatagcaaacatgtgggttaaaggaagtagaacaggatggattagcatgagc |
375 |
Q |
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| T |
42467011 |
atgaatgtgggaggtggaggtgatatagcaaacatgtgggttaaaggaagtagaacaggatggattagcatgagc |
42467085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 254 - 367
Target Start/End: Complemental strand, 3183751 - 3183638
Alignment:
| Q |
254 |
ttcgattctctttccaaggaaatggatattggttattggtgtacgtgatgaatgtgggaggtggaggtgatatagcaaacatgtgggttaaaggaagtag |
353 |
Q |
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| T |
3183751 |
ttcgattttctttccaaggaaacgggtactggctattggtgtatgtgatgaacgtcggaggtggaggagatatgtcgagcatgatggtgaaaggaagcag |
3183652 |
T |
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| Q |
354 |
aacaggatggatta |
367 |
Q |
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| T |
3183651 |
aacaggatggatta |
3183638 |
T |
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