View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20912_low_3 (Length: 382)
Name: NF20912_low_3
Description: NF20912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20912_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 19 - 370
Target Start/End: Complemental strand, 23314136 - 23313785
Alignment:
| Q |
19 |
ctttacaccttcaacattgtctacatcagaagcactatctaagtcatcagttacataaccatcttcaagtccaccattgtcatcatgttggtcgacatta |
118 |
Q |
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| T |
23314136 |
ctttacaccttcaacattgtctacatcagaagcactatctaagtcatcagttacataaccatcttcaagtccaccattgtcatcatgttggtcgacatta |
23314037 |
T |
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| Q |
119 |
agtccttgtccctgatgtacatcattctccaccacactagcacaagctactaacccttcctctacaaatccatcatcttcaacaaacatcttttcctctt |
218 |
Q |
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|||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
23314036 |
agtctttgtctctgatgtacatcattctccaccacaccagcacaagctactaacccttcctctacaaatccatcatcttcaagaaacatcctttcctctt |
23313937 |
T |
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| Q |
219 |
cactatcatcaaagtgtacctcatcagcaatatggtcactatctgaactctcattttctgaaacatcttcaccctcagaagcaatccctttccctttgta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
23313936 |
cactatcatcaaagtgtacctcatcagcaatatggtcactatctgaactctcattttctgaaacatcttcaccctcagcagcaatccctttccctttgta |
23313837 |
T |
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| Q |
319 |
gtcaaatttgcttgcaccagcaccatagagttcaacaccctccacacacctt |
370 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
23313836 |
gtcagatttgcttgcaccaacaccatagagttcaacaccctccacacacctt |
23313785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 268 - 370
Target Start/End: Complemental strand, 7853038 - 7852936
Alignment:
| Q |
268 |
ctcattttctgaaacatcttcaccctcagaagcaatccctttccctttgtagtcaaatttgcttgcaccagcaccatagagttcaacaccctccacacac |
367 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7853038 |
ctcattttctgaaacatcttcaccctcagcagcaatccctttccctttgtagtcagatttgcctgcaccagcaccatagagttcaacaccctccacacac |
7852939 |
T |
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| Q |
368 |
ctt |
370 |
Q |
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||| |
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| T |
7852938 |
ctt |
7852936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 298 - 360
Target Start/End: Original strand, 33135595 - 33135657
Alignment:
| Q |
298 |
agcaatccctttccctttgtagtcaaatttgcttgcaccagcaccatagagttcaacaccctc |
360 |
Q |
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|||||| ||||||||||||| || || ||||||||||||| ||||||| |||||||||||||| |
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| T |
33135595 |
agcaatacctttccctttgtcgttaagtttgcttgcaccaacaccataaagttcaacaccctc |
33135657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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