View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20913_low_2 (Length: 396)

Name: NF20913_low_2
Description: NF20913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20913_low_2
NF20913_low_2
[»] chr4 (6 HSPs)
chr4 (17-396)||(48965725-48966104)
chr4 (242-395)||(48962691-48962844)
chr4 (234-395)||(48911963-48912124)
chr4 (310-385)||(48958554-48958629)
chr4 (36-96)||(48958837-48958897)
chr4 (230-388)||(48974513-48974671)
[»] chr6 (2 HSPs)
chr6 (233-395)||(12589786-12589948)
chr6 (313-395)||(12483161-12483243)
[»] chr2 (3 HSPs)
chr2 (232-385)||(13440607-13440760)
chr2 (310-385)||(13448770-13448845)
chr2 (116-193)||(13448962-13449039)
[»] chr5 (2 HSPs)
chr5 (310-385)||(28385741-28385816)
chr5 (310-385)||(12541092-12541167)
[»] scaffold0536 (2 HSPs)
scaffold0536 (250-388)||(6145-6283)
scaffold0536 (311-395)||(10190-10274)


Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 17 - 396
Target Start/End: Complemental strand, 48966104 - 48965725
Alignment:
Q  17 aagcttcgggtccccaatctcgccttcaatggtttctccctgtttaccgtatgtctcatggaaacccttagaacaaacccatcaatatatcctcatatgg 116  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48966104 aagctttgggtcccgaatctcgccttcaatggtttctccctgtttaccgtatgtctcatggaaacccttagaacaaacccatcaatatatcctcatatgg 48966005  T
Q  117 attctgattcagattcgggttcatttgttgttcgaaatttacctcaccctatcaccttgtctggaagacagccaaagtcatcagaagaatttatgggatc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  48966004 attctgattcagattcgggttcatttgttgttcgaaatttacctcaccctatcaccttgtctggaagactgccaaagtcatcagaagaatttatgggatc 48965905  T
Q  217 aatgctggagaaagagctcaaaagtaatggacacattgtcaacaatttcgctgagcttgacggggaagagtacattaagtattatgagaatagcacgggt 316  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||    
T  48965904 aatgctggagaaagagctcaaaagtaatggactcattgtcaacaatttcgctgagcttgacggggaagagtacattaaatattatgtgagtagcacgggt 48965805  T
Q  317 cataaggcttggcatcttggtccagcttcgcttattcgtaagactgttcaagagaaagcagagaggggacaagagagtgc 396  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  48965804 cataaggcttggcatcttggtccagcttctcttattcgtaaaactgttcaagagaaagcagagaggggacaagagagtgc 48965725  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 242 - 395
Target Start/End: Complemental strand, 48962844 - 48962691
Alignment:
Q  242 aatggacacattgtcaacaatttcgctgagcttgacggggaagagtacattaagtattatgagaatagcacgggtcataaggcttggcatcttggtccag 341  Q
    ||||||| |||||||||||| |||||||| |||||||| ||||||| |||  |  | || ||||| | ||||||||| |||||||||||||| |||||||    
T  48962844 aatggactcattgtcaacaacttcgctgaacttgacggtgaagagtgcatcgaacactacgagaaaaccacgggtcacaaggcttggcatctcggtccag 48962745  T
Q  342 cttcgcttattcgtaagactgttcaagagaaagcagagaggggacaagagagtg 395  Q
     ||| |||||||| ||  | ||||||||||||||||| |||||||| |||||||    
T  48962744 tttctcttattcgcaaatccgttcaagagaaagcagaaaggggacatgagagtg 48962691  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 234 - 395
Target Start/End: Original strand, 48911963 - 48912124
Alignment:
Q  234 tcaaaagtaatggacacattgtcaacaatttcgctgagcttgacggggaagagtacattaagtattatgagaatagcacgggtcataaggcttggcatct 333  Q
    |||||||||| |||  | ||||||||||||| ||||| |||||||| |||||||| ||  |  | || ||||| |  ||  |||| || |||||||||||    
T  48911963 tcaaaagtaacggaatccttgtcaacaattttgctgaacttgacggtgaagagtatatcgaacactacgagaaaactacttgtcacaaagcttggcatct 48912062  T
Q  334 tggtccagcttcgcttattcgtaagactgttcaagagaaagcagagaggggacaagagagtg 395  Q
    |||||||||||| |||||||| |  ||| |||||||||| || ||||| ||| |||||||||    
T  48912063 tggtccagcttctcttattcgcagaactattcaagagaaggctgagagaggagaagagagtg 48912124  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 385
Target Start/End: Complemental strand, 48958629 - 48958554
Alignment:
Q  310 cacgggtcataaggcttggcatcttggtccagcttcgcttattcgtaagactgttcaagagaaagcagagagggga 385  Q
    ||||||||| |||| ||||||||||||||| ||||| ||||||||  | ||  ||||||||||| |||||||||||    
T  48958629 cacgggtcacaaggtttggcatcttggtcctgcttctcttattcgccaaaccattcaagagaaatcagagagggga 48958554  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 96
Target Start/End: Complemental strand, 48958897 - 48958837
Alignment:
Q  36 tcgccttcaatggtttctccctgtttaccgtatgtctcatggaaacccttagaacaaaccc 96  Q
    ||||||||| |||||||||||| |||||||| |  ||||||||| ||||||||| ||||||    
T  48958897 tcgccttcactggtttctccctctttaccgtctccctcatggaatcccttagaataaaccc 48958837  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 388
Target Start/End: Complemental strand, 48974671 - 48974513
Alignment:
Q  230 gagctcaaaagtaatggacacattgtcaacaatttcgctgagcttgacggggaagagtacattaagtattatgagaatagcacgggtcataaggcttggc 329  Q
    |||||||||||  |||| | ||| |||||||| ||| |||||||||| || |||||||||||  || |||||||||| |  |  ||||||   |||||||    
T  48974671 gagctcaaaagctatgggctcatcgtcaacaacttcactgagcttgatggagaagagtacatcgagcattatgagaaaacaataggtcatcgagcttggc 48974572  T
Q  330 atcttggtccagcttcgcttattcgtaagactgttcaagagaaagcagagaggggacaa 388  Q
    || | || ||| |||| || ||| ||| |||   ||||||||||||||| |||||||||    
T  48974571 atttgggaccatcttctctcatttgtaggaccactcaagagaaagcagataggggacaa 48974513  T

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Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 233 - 395
Target Start/End: Original strand, 12589786 - 12589948
Alignment:
Q  233 ctcaaaagtaatggacacattgtcaacaatttcgctgagcttgacggggaagagtacattaagtattatgagaatagcacgggtcataaggcttggcatc 332  Q
    |||||||||||||||| |||||| ||||| |||||||| ||||| ||  ||||||   | ||  | |||||||| | ||| ||||| |||||||||||||    
T  12589786 ctcaaaagtaatggactcattgttaacaacttcgctgaacttgatggccaagagtgtgtcaaacactatgagaaaaccacaggtcacaaggcttggcatc 12589885  T
Q  333 ttggtccagcttcgcttattcgtaagactgttcaagagaaagcagagaggggacaagagagtg 395  Q
    ||||||||||||| |||||||  || |||||||||||||||||||| |||||| | |||||||    
T  12589886 ttggtccagcttctcttattcacaaaactgttcaagagaaagcagataggggaaatgagagtg 12589948  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 395
Target Start/End: Original strand, 12483161 - 12483243
Alignment:
Q  313 gggtcataaggcttggcatcttggtccagcttcgcttattcgtaagactgttcaagagaaagcagagaggggacaagagagtg 395  Q
    |||||| |||||||||||| | ||||||  ||| |||||| || | ||||||||||| || |||||||||||| | |||||||    
T  12483161 gggtcacaaggcttggcatttaggtccacattcacttatttgtgaaactgttcaagaaaaggcagagaggggaaacgagagtg 12483243  T

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Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 232 - 385
Target Start/End: Complemental strand, 13440760 - 13440607
Alignment:
Q  232 gctcaaaagtaatggacacattgtcaacaatttcgctgagcttgacggggaagagtacattaagtattatgagaatagcacgggtcataaggcttggcat 331  Q
    |||||||||||| | || |||  ||||||| ||| |||| |||||||| ||||||| |||  |  | |||||||| | ||||||||| |||| |||||||    
T  13440760 gctcaaaagtaaagcactcatcatcaacaacttcactgaacttgacggagaagagtgcatccaacactatgagaaaaccacgggtcacaaggtttggcat 13440661  T
Q  332 cttggtccagcttcgcttattcgtaagactgttcaagagaaagcagagagggga 385  Q
    || |||||| |||| ||||||||||| ||  |||||||||||||||||||||||    
T  13440660 ctcggtccaacttctcttattcgtaaaaccattcaagagaaagcagagagggga 13440607  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 310 - 385
Target Start/End: Complemental strand, 13448845 - 13448770
Alignment:
Q  310 cacgggtcataaggcttggcatcttggtccagcttcgcttattcgtaagactgttcaagagaaagcagagagggga 385  Q
    ||||||||| |||| |||||||||||||||| |||| |||||||| || |||| |||||||||| |||||||||||    
T  13448845 cacgggtcacaaggtttggcatcttggtccaacttctcttattcgcaaaactgctcaagagaaatcagagagggga 13448770  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 193
Target Start/End: Complemental strand, 13449039 - 13448962
Alignment:
Q  116 gattctgattcagattcgggttcatttgttgttcgaaatttacctcaccctatcaccttgtctggaagacagccaaag 193  Q
    ||||||||||| |||||  |||| |||||||||| |||||| ||||||| ||||||||||| ||||| || |||||||    
T  13449039 gattctgattcggattcaagttcctttgttgttccaaattttcctcaccatatcaccttgtgtggaaaaccgccaaag 13448962  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 310 - 385
Target Start/End: Complemental strand, 28385816 - 28385741
Alignment:
Q  310 cacgggtcataaggcttggcatcttggtccagcttcgcttattcgtaagactgttcaagagaaagcagagagggga 385  Q
    ||||||||| ||||||||||||||||||||| ||||  |||||||||| |||||||||||||||||||||| ||||    
T  28385816 cacgggtcacaaggcttggcatcttggtccaacttcctttattcgtaaaactgttcaagagaaagcagagaaggga 28385741  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 310 - 385
Target Start/End: Complemental strand, 12541167 - 12541092
Alignment:
Q  310 cacgggtcataaggcttggcatcttggtccagcttcgcttattcgtaagactgttcaagagaaagcagagagggga 385  Q
    ||||||||| ||||||||||||||||||||| ||||  ||||||  || |   ||||||||||||||| |||||||    
T  12541167 cacgggtcacaaggcttggcatcttggtccaacttcttttattcagaaaaacattcaagagaaagcagggagggga 12541092  T

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Target: scaffold0536 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 250 - 388
Target Start/End: Original strand, 6145 - 6283
Alignment:
Q  250 cattgtcaacaatttcgctgagcttgacggggaagagtacattaagtattatgagaatagcacgggtcataaggcttggcatcttggtccagcttcgctt 349  Q
    |||||| ||||||||  |||| |||||||| |||||||||||  |  | || ||||| |  || ||||| || ||||||||||||||||| ||||| |||    
T  6145 cattgttaacaatttttctgaacttgacggtgaagagtacatcgaacactacgagaaaactacaggtcacaaagcttggcatcttggtccggcttctctt 6244  T
Q  350 attcgtaagactgttcaagagaaagcagagaggggacaa 388  Q
    |||||||  ||||||||||| |||||| |||||||||||    
T  6245 attcgtagaactgttcaagaaaaagcacagaggggacaa 6283  T

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Target: scaffold0536; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 311 - 395
Target Start/End: Original strand, 10190 - 10274
Alignment:
Q  311 acgggtcataaggcttggcatcttggtccagcttcgcttattcgtaagactgttcaagagaaagcagagaggggacaagagagtg 395  Q
    |||||||| || |||||||||||| |||||||||  ||| ||||||  ||||||||||||||| ||||||| ||| || ||||||    
T  10190 acgggtcagaaagcttggcatcttagtccagcttatcttgttcgtagaactgttcaagagaaaacagagagaggagaacagagtg 10274  T

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