View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20913_low_4 (Length: 353)
Name: NF20913_low_4
Description: NF20913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20913_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 35252947 - 35252606
Alignment:
| Q |
1 |
tccctgcgcttctattatgatcattgagtcccatctatatctctgtttaagtaaatgttacagaggttatacagttagactcagtcatagttgaacctat |
100 |
Q |
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| T |
35252947 |
tccctgcgcttctattatgatcattaagtcccatctatatctctgtt-aagtaaatgttacagaggttatacagttagactcagtcatagttgaacctat |
35252849 |
T |
|
| Q |
101 |
taaaactataaaagtatacgaggtggttgcataaatagtaagtaaataatctgtggacaacttattgcagtgcttggaattgttgattcttgagactgag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35252848 |
taaaactataaaagtatacgaggtggttgcataaatagtaagtaaataatctgtggacaacttattgcagtgcttggaattgttgattcttgagactgag |
35252749 |
T |
|
| Q |
201 |
aaaagacgtaataaaggaggtgcctctgatgtattaattactggactagcagctactacggcgcgaagtgaattcaatattgcatcagctagcagtgatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35252748 |
aaaagacgtaataaaggaggtgcctctgatgtattaattactggactagcagctactacggcgcgaagtgaattcaatattgcatcagctagcagtgatt |
35252649 |
T |
|
| Q |
301 |
ctgtggtgaagatatggaaatgaagttctagttaatgtctctg |
343 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35252648 |
ctgtggtgaagatatggaaatgaagttctagtaaatgtctctg |
35252606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 28 - 343
Target Start/End: Complemental strand, 35240667 - 35240354
Alignment:
| Q |
28 |
gtcccatctatatctctgtttaagtaaatgttacagaggttatacagttagactcagtcatagttgaacctattaaaactataaaagtatacgaggtggt |
127 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35240667 |
gtcccatctatatctccgtttaagtaaatgttacagaggtta--cagttagactcagtcatagttgaacctattaaaactataaaagtatacgaggtggt |
35240570 |
T |
|
| Q |
128 |
tgcataaatagtaagtaaataatctgtggacaacttattgcagtgcttggaattgttgattcttgagactgagaaaagacgtaataaaggaggtgcctct |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| | ||| ||||| |||||||| ||||||| |
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| T |
35240569 |
tgcataaatagtaagtaaataatctgtggacaacttattgcagtgcttggaattgttgactgttgagaccagggaaatacgtactaaaggagatgcctct |
35240470 |
T |
|
| Q |
228 |
gatgtattaattactggactagcagctactacggcgcgaagtgaattcaatattgcatcagctagcagtgattctgtggtgaagatatggaaatgaagtt |
327 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35240469 |
gatgtattaattactggactagcagctactacagcgcgaagtgaattcgatattgcatcagctagcagtaattctgtggtgaagatatggaaatgaagtt |
35240370 |
T |
|
| Q |
328 |
ctagttaatgtctctg |
343 |
Q |
| |
|
|||||||||||||||| |
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| T |
35240369 |
ctagttaatgtctctg |
35240354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 134 - 343
Target Start/End: Complemental strand, 35246027 - 35245818
Alignment:
| Q |
134 |
aatagtaagtaaataatctgtggacaacttattgcagtgcttggaattgttgattcttgagactgagaaaagacgtaataaaggaggtgcctctgatgta |
233 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||| ||||||| |||||| | | ||||| |||||||||| ||||||||||| || |
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| T |
35246027 |
aatattaagtaaataatcttcggacaacttattgcagtgcttggaatggttgattattgagaacgggcaaagatttaataaaggaagtgcctctgatata |
35245928 |
T |
|
| Q |
234 |
ttaattactggactagcagctactacggcgcgaagtgaattcaatattgcatcagctagcagtgattctgtggtgaagatatggaaatgaagttctagtt |
333 |
Q |
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| ||||||||||||||||||| | ||||||| |||||||||| |||||||||| ||||||| ||||||| |||||||| |||||||||||| |||||||| |
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| T |
35245927 |
tcaattactggactagcagcttcaacggcgcaaagtgaattccatattgcatccgctagcactgattctatggtgaagctatggaaatgaaattctagtt |
35245828 |
T |
|
| Q |
334 |
aatgtctctg |
343 |
Q |
| |
|
|||||||||| |
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|
| T |
35245827 |
aatgtctctg |
35245818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 35270105 - 35270037
Alignment:
| Q |
127 |
ttgcataaatagtaagtaaataatctgtggacaacttattgcagtgcttggaattgttgattcttgaga |
195 |
Q |
| |
|
||||||||| || ||||||||||| |||| |||| ||||| |||||| ||||||||||||||||||||| |
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|
| T |
35270105 |
ttgcataaagagaaagtaaataatatgtgtacaatttattacagtgcctggaattgttgattcttgaga |
35270037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 35246293 - 35246229
Alignment:
| Q |
31 |
ccatctatatctctgtttaagtaaatgttacagaggttatacagttagactcagtcatagttgaacc |
97 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||| |||| ||||||||||||||||||||||| |
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| T |
35246293 |
ccatctatatctccatttaagtaactgttacagaggt--tacacttagactcagtcatagttgaacc |
35246229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 35277159 - 35277094
Alignment:
| Q |
127 |
ttgcataaatagtaagtaaataatctgtggacaacttattgcagtgcttggaattgttgattcttg |
192 |
Q |
| |
|
||||||| || | |||||||||||||||| |||| ||||||||| || |||||||||||| ||||| |
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|
| T |
35277159 |
ttgcatagatggaaagtaaataatctgtgtacaatttattgcagggcatggaattgttgactcttg |
35277094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 342
Target Start/End: Complemental strand, 35285893 - 35285852
Alignment:
| Q |
301 |
ctgtggtgaagatatggaaatgaagttctagttaatgtctct |
342 |
Q |
| |
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|||||||||| |||||||||||||||||||||| |||||||| |
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| T |
35285893 |
ctgtggtgaacatatggaaatgaagttctagttgatgtctct |
35285852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 327
Target Start/End: Complemental strand, 35269958 - 35269914
Alignment:
| Q |
283 |
catcagctagcagtgattctgtggtgaagatatggaaatgaagtt |
327 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
35269958 |
catcagctagcgatgattctgtggtgaagatatggagatgaagtt |
35269914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 195
Target Start/End: Complemental strand, 35274873 - 35274830
Alignment:
| Q |
152 |
tgtggacaacttattgcagtgcttggaattgttgattcttgaga |
195 |
Q |
| |
|
|||| |||| |||||||||||||||||| ||||||||||||||| |
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|
| T |
35274873 |
tgtgtacaatttattgcagtgcttggaaatgttgattcttgaga |
35274830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 35282746 - 35282681
Alignment:
| Q |
127 |
ttgcataaatagtaagtaaataatctgtggacaacttattgcagtgcttggaattgttgattcttg |
192 |
Q |
| |
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|||||||||| | ||| || ||||||||| |||| |||||||||||| ||||||||| || ||||| |
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| T |
35282746 |
ttgcataaatggaaagcaactaatctgtgtacaatttattgcagtgcatggaattgtggactcttg |
35282681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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