View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20914_high_12 (Length: 374)
Name: NF20914_high_12
Description: NF20914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20914_high_12 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 6 - 374
Target Start/End: Complemental strand, 32298111 - 32297743
Alignment:
| Q |
6 |
gagaagaattaaaaagtggtcctgcatgcattagagtgatatcaacattggacgacataattgaatagaagaaaatgagcttgaagggatcaataagaac |
105 |
Q |
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| T |
32298111 |
gagaaggattaaaaagtggtcctgcatgcattagagtgatatcaacattggacgacataattgaatagaagaaaatgagcttgaagggatcaataagaac |
32298012 |
T |
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| Q |
106 |
tttgaataattagtggtcctgcattagaattagaatacatacaagaacaagacccaattgaccaatcacatgcccatttatcgaaatatcttgtatataa |
205 |
Q |
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| T |
32298011 |
tttgaataattagtggtcctgcattagaattagaatacatacaagaacaagacccaattgaccaatcacacgcccatttatcgaaatatcttgtatataa |
32297912 |
T |
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| Q |
206 |
ataaataattaaaaggtgatagattgatcaagtttaattgtacttgctttgtcaaaagaaagnnnnnnnnnttaagttcagttgtacttggatctcgaaa |
305 |
Q |
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| T |
32297911 |
ataaataattaaaaggtgatagattgatcaagtttaattgtacttgctttgtcaaaagaaagaaaaaaaaattaagttcagttgtacttggatctcgaaa |
32297812 |
T |
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| Q |
306 |
tcctctaaccagtggttttactgtgttagttcagttatacacacatgcaaacaatataaaataatgaaa |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32297811 |
tcctctaaccagtggttttactgtgttagttcagttatacacacatgcaaacaatataaaataatgaaa |
32297743 |
T |
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