View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20914_high_31 (Length: 208)
Name: NF20914_high_31
Description: NF20914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20914_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 18924944 - 18925115
Alignment:
| Q |
19 |
acattgatgactccaaactattctctatcattgaaccacagactgaattttcatctatcaaatccaaacccaaccctaactctgattctgttaaccaaat |
118 |
Q |
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| T |
18924944 |
acatggatgacaccaaactattctctatcattgaaccacagactgaattttcatctatcaaatccaaacccaaccctaactctgattctgttaaccaaat |
18925043 |
T |
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| Q |
119 |
tccgtttgcctcagcacgtatttcattttccaacttcacattctcatttccttccgtcgctaatggccctat |
190 |
Q |
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| T |
18925044 |
tccgtttgcctcagcacgtatttcattttccaacttcacattctcatttccttccgtcgctaatagccctat |
18925115 |
T |
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Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 31 - 190
Target Start/End: Complemental strand, 4631820 - 4631661
Alignment:
| Q |
31 |
ccaaactattctctatcattgaaccacagactgaattttcatctatcaaatccaaacccaaccctaactctgattctgttaaccaaattccgtttgcctc |
130 |
Q |
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| T |
4631820 |
ccaaattattctctatcattgaaccacaaaccgaactcccgtctttcaaagccaaagctaatcctaactctgatgctgttaagcgaattcccttcgcctc |
4631721 |
T |
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| Q |
131 |
agcacgtatttcattttccaacttcacattctcatttccttccgtcgctaatggccctat |
190 |
Q |
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| T |
4631720 |
tgcacgtatttctttttcgaatttcacattctccttttcttccatcaccaatggccctat |
4631661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 167
Target Start/End: Complemental strand, 4667760 - 4667686
Alignment:
| Q |
93 |
cctaactctgattctgttaaccaaattccgtttgcctcagcacgtatttcattttccaacttcacattctcattt |
167 |
Q |
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| T |
4667760 |
cctaactctgattctgttaatcatattccattttcctctgcacgtatatcattttccgatttcacattctcattt |
4667686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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