View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20914_low_10 (Length: 433)

Name: NF20914_low_10
Description: NF20914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20914_low_10
NF20914_low_10
[»] chr6 (15 HSPs)
chr6 (7-421)||(32536483-32536898)
chr6 (9-288)||(15959084-15959364)
chr6 (27-260)||(14373289-14373523)
chr6 (30-214)||(24767769-24767953)
chr6 (17-260)||(18651532-18651776)
chr6 (31-115)||(13937312-13937396)
chr6 (17-124)||(18789314-18789421)
chr6 (30-172)||(5734628-5734770)
chr6 (14-109)||(11462010-11462105)
chr6 (17-126)||(12429065-12429174)
chr6 (17-114)||(12733723-12733820)
chr6 (17-129)||(21167823-21167935)
chr6 (165-216)||(11462159-11462210)
chr6 (14-115)||(20883474-20883575)
chr6 (168-216)||(20883376-20883424)
[»] chr3 (19 HSPs)
chr3 (9-288)||(26771259-26771536)
chr3 (27-260)||(40930826-40931060)
chr3 (17-260)||(34333113-34333357)
chr3 (31-115)||(963607-963691)
chr3 (9-115)||(48570483-48570589)
chr3 (31-109)||(50651798-50651876)
chr3 (14-115)||(15312177-15312278)
chr3 (14-214)||(3140447-3140647)
chr3 (17-114)||(2363875-2363972)
chr3 (17-114)||(7312375-7312472)
chr3 (17-102)||(10312976-10313061)
chr3 (17-102)||(15827309-15827394)
chr3 (15-91)||(16178544-16178620)
chr3 (17-96)||(10324034-10324113)
chr3 (33-108)||(17098327-17098402)
chr3 (177-216)||(19890436-19890475)
chr3 (17-124)||(19920664-19920771)
chr3 (27-101)||(7031926-7032000)
chr3 (7-115)||(11203407-11203515)
[»] chr2 (13 HSPs)
chr2 (9-288)||(17765232-17765512)
chr2 (27-208)||(28252329-28252509)
chr2 (13-271)||(15917247-15917507)
chr2 (7-171)||(41206594-41206758)
chr2 (14-205)||(12645131-12645322)
chr2 (9-115)||(33516228-33516334)
chr2 (21-115)||(44472960-44473054)
chr2 (7-115)||(40176258-40176366)
chr2 (14-115)||(15391738-15391839)
chr2 (18-117)||(3400583-3400682)
chr2 (52-214)||(4551802-4551964)
chr2 (9-91)||(11000418-11000500)
chr2 (158-205)||(23290081-23290128)
[»] chr8 (19 HSPs)
chr8 (14-279)||(34137242-34137508)
chr8 (17-254)||(13395986-13396224)
chr8 (17-254)||(41665673-41665911)
chr8 (7-202)||(5181257-5181452)
chr8 (17-187)||(32567637-32567806)
chr8 (17-260)||(32266162-32266406)
chr8 (22-129)||(9922204-9922311)
chr8 (12-115)||(12257895-12257998)
chr8 (12-115)||(12265287-12265390)
chr8 (9-208)||(13199713-13199912)
chr8 (17-114)||(7923984-7924081)
chr8 (13-91)||(2529480-2529558)
chr8 (17-254)||(20496682-20496920)
chr8 (9-95)||(29733414-29733500)
chr8 (17-114)||(8299401-8299498)
chr8 (156-208)||(25090124-25090176)
chr8 (9-115)||(25089976-25090083)
chr8 (153-202)||(13879844-13879893)
chr8 (14-114)||(2169935-2170035)
[»] chr4 (29 HSPs)
chr4 (27-208)||(23162983-23163163)
chr4 (27-273)||(11587483-11587730)
chr4 (9-216)||(17402029-17402236)
chr4 (17-124)||(19754861-19754968)
chr4 (17-124)||(19784838-19784945)
chr4 (17-129)||(47686325-47686437)
chr4 (27-114)||(7403520-7403607)
chr4 (31-214)||(46145287-46145470)
chr4 (28-94)||(8890632-8890698)
chr4 (12-115)||(19740484-19740587)
chr4 (17-129)||(15739819-15739931)
chr4 (17-172)||(20788666-20788822)
chr4 (156-260)||(2822335-2822440)
chr4 (9-126)||(5790521-5790638)
chr4 (17-114)||(23643036-23643133)
chr4 (9-125)||(48241969-48242085)
chr4 (17-124)||(160126-160233)
chr4 (17-96)||(47418403-47418482)
chr4 (9-91)||(55726061-55726143)
chr4 (14-115)||(48311685-48311786)
chr4 (31-115)||(36223533-36223617)
chr4 (177-216)||(20002476-20002515)
chr4 (14-115)||(2822481-2822582)
chr4 (9-115)||(54483603-54483709)
chr4 (17-114)||(13271336-13271433)
chr4 (17-102)||(16427147-16427232)
chr4 (153-202)||(48311824-48311873)
chr4 (153-202)||(54483516-54483565)
chr4 (14-46)||(5143014-5143046)
[»] chr5 (25 HSPs)
chr5 (7-218)||(29142388-29142599)
chr5 (7-260)||(19255421-19255675)
chr5 (17-129)||(42927729-42927841)
chr5 (22-214)||(35984136-35984327)
chr5 (14-120)||(26072488-26072594)
chr5 (22-172)||(28536062-28536212)
chr5 (31-260)||(32228416-32228646)
chr5 (17-260)||(23237981-23238225)
chr5 (31-211)||(33169270-33169450)
chr5 (14-216)||(18359433-18359635)
chr5 (17-260)||(25824609-25824853)
chr5 (22-172)||(31641360-31641510)
chr5 (17-114)||(12824797-12824894)
chr5 (9-105)||(26019431-26019527)
chr5 (17-103)||(8227624-8227710)
chr5 (31-105)||(8941862-8941936)
chr5 (156-257)||(26019287-26019389)
chr5 (52-126)||(27166385-27166459)
chr5 (17-114)||(12820394-12820491)
chr5 (14-115)||(24407548-24407649)
chr5 (17-114)||(27117606-27117703)
chr5 (17-114)||(42513318-42513415)
chr5 (14-126)||(17106695-17106807)
chr5 (17-114)||(30732759-30732856)
chr5 (153-205)||(27795217-27795269)
[»] chr1 (20 HSPs)
chr1 (27-160)||(47623464-47623597)
chr1 (7-160)||(13351902-13352055)
chr1 (17-260)||(6259415-6259659)
chr1 (31-115)||(6478131-6478215)
chr1 (17-260)||(26059489-26059733)
chr1 (17-122)||(4841997-4842102)
chr1 (111-203)||(19161189-19161281)
chr1 (17-124)||(12813639-12813746)
chr1 (28-103)||(24547522-24547597)
chr1 (17-114)||(11909550-11909647)
chr1 (12-109)||(37297949-37298046)
chr1 (9-91)||(17400702-17400784)
chr1 (17-114)||(6050200-6050297)
chr1 (17-114)||(51052078-51052175)
chr1 (65-115)||(4646502-4646552)
chr1 (17-254)||(35540647-35540885)
chr1 (31-216)||(2490824-2491009)
chr1 (156-208)||(51994079-51994131)
chr1 (9-46)||(25560713-25560750)
chr1 (9-61)||(51994224-51994276)
[»] chr7 (14 HSPs)
chr7 (17-261)||(47876581-47876826)
chr7 (30-260)||(235737-235968)
chr7 (17-187)||(29967573-29967743)
chr7 (17-260)||(11277550-11277795)
chr7 (17-124)||(37919142-37919249)
chr7 (22-129)||(17720247-17720354)
chr7 (14-216)||(37254353-37254555)
chr7 (68-129)||(34359427-34359488)
chr7 (14-115)||(48394499-48394600)
chr7 (17-96)||(4938591-4938670)
chr7 (17-114)||(38890165-38890262)
chr7 (177-216)||(25619217-25619256)
chr7 (17-96)||(31177768-31177847)
chr7 (9-90)||(41698608-41698689)
[»] scaffold0511 (1 HSPs)
scaffold0511 (17-124)||(5847-5954)
[»] scaffold0369 (1 HSPs)
scaffold0369 (17-114)||(11650-11747)
[»] scaffold0161 (1 HSPs)
scaffold0161 (33-129)||(6439-6535)
[»] scaffold0034 (1 HSPs)
scaffold0034 (17-114)||(106288-106385)


Alignment Details
Target: chr6 (Bit Score: 296; Significance: 1e-166; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 7 - 421
Target Start/End: Original strand, 32536483 - 32536898
Alignment:
Q  7 caatgctcatacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttac 106  Q
    ||||||||||||||||||||| ||||||||||||||||| | || |||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  32536483 caatgctcatacataaaagtgagctcgaccaccaattattagtaccaaaactaaaaacaacattaatagcttttaaccaccaaaaagaagatgattttac 32536582  T
Q  107 tttgtctaatatttgtggtaaagcgttgtgcctgtttctaaaaattctatcatttcgatcattccataggacccaaacacactgaagccaaatcaaatgg 206  Q
    ||||||||| ||||||||||||| | |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||     
T  32536583 tttgtctaacatttgtggtaaagagctgtgcctgtttctaaaaattctatcattccgatcattcgataggacccaaacacactgaagtcaaatcaaatga 32536682  T
Q  207 aaaaaagatcttcacaatttcaaa-aacctgcgtaatgaataaattgcaaaaaatagtccgaaatatgttgaggatgaaccccaagccaagccctcacca 305  Q
    ||||||||||||  |||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  32536683 aaaaaagatctttgcaattttaaacaacctgcgtaatgaataaattgcaaaaaataatccgaaatatgttgaggatcaaccccaagccaagccctcacca 32536782  T
Q  306 atctatgcattgtgatttgatagtacatgtgtnnnnnnnnnnnntttacaccatctatgcatgtaaattattttcgttcttcaacccctcatttaaaaat 405  Q
    ||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32536783 atctatgcattgtgatttgatagtacatgtgtaaaaaaaaaaaaattacaccatctatgcatgtaaattattttcgttcttcaacccctcatttaaaaat 32536882  T
Q  406 aaataaaaacaagtat 421  Q
    ||||||||||||||||    
T  32536883 aaataaaaacaagtat 32536898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 9 - 288
Target Start/End: Complemental strand, 15959364 - 15959084
Alignment:
Q  9 atgctcatacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactt 108  Q
    |||| |||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| || |||||||||||||||||||||||||||||||||    
T  15959364 atgcccatacataaaagtgggctcgaccaccaattatgagtaccaaaactaaaaacaacattactaacttttaaccaccacaaagaagatgattttactt 15959265  T
Q  109 tgtctaatatttgtggtaaagcgttgtgcctgtttctaaaaattctatcatttcgatcattccataggacccaaacacactgaagccaaatcaaatggaa 208  Q
    ||||||| |||||||||||||   | ||| |||||||||||||||||||||| ||||||||||||||| |||||  ||||| ||||||||||||||||||    
T  15959264 tgtctaacatttgtggtaaagaactctgcttgtttctaaaaattctatcattccgatcattccataggtcccaattacacttaagccaaatcaaatggaa 15959165  T
Q  209 aaaagatcttcacaatttcaa-aaacctgcgtaatgaataaattgcaaaaaatagtccgaaatatgttgaggatgaacccc 288  Q
    ||||||||||| | |||||||  ||||||||||||||| ||||||| |||||| ||| |||||||| ||||||||||||||    
T  15959164 aaaagatcttcgcgatttcaagcaacctgcgtaatgaacaaattgcgaaaaatggtctgaaatatgctgaggatgaacccc 15959084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 27 - 260
Target Start/End: Complemental strand, 14373523 - 14373289
Alignment:
Q  27 gggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaatatttgtggta 126  Q
    |||||||||||||||||||||||| || | ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  14373523 gggctcgaccaccaattatgaataccatagctaaaaacaacattactagcttttaaccaccacaaagaagatgattttactttgtctaacatttgtgata 14373424  T
Q  127 aagcgttgtgcctgtttctaaaaattctatcatttcgatcattccataggacccaaacacactgaagccaaatcaaatggaaaaaagatcttcacaattt 226  Q
    |||   | ||| |||||||||||| | ||||||| || ||||||||||  ||||||| |||||||||||||||||||||||| || ||||  |   ||||    
T  14373423 aagaactctgcatgtttctaaaaactatatcattccgctcattccataaaacccaaaaacactgaagccaaatcaaatggaagaatgatcgacgtgattt 14373324  T
Q  227 caaa-aacctgcgtaatgaataaattgcaaaaaat 260  Q
    ||||  ||| || || |||||||||||||||||||    
T  14373323 caaactaccagcatactgaataaattgcaaaaaat 14373289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 30 - 214
Target Start/End: Complemental strand, 24767953 - 24767769
Alignment:
Q  30 ctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaatatttgtggtaaag 129  Q
    ||||||||||||||||||||| | |||||||| |||||||||  |||||||||||||||||||||||||||||| ||||| ||||  |||||||| ||||    
T  24767953 ctcgaccaccaattatgaatacccaaactaaatacagcattacaagcttttaaccaccacaaagaagatgatttcactttatctagcatttgtggcaaag 24767854  T
Q  130 cgttgtgcctgtttctaaaaattctatcatttcgatcattccataggacccaaacacactgaagccaaatcaaatggaaaaaaga 214  Q
     | | || || |||||||||||| | ||||| || |||||||| |  ||| |||||||  | | ||||||||| |||||||||||    
T  24767853 agctttgtctatttctaaaaattatgtcattacgttcattccacaacaccgaaacacaaagcaaccaaatcaagtggaaaaaaga 24767769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 260
Target Start/End: Complemental strand, 18651776 - 18651532
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaat 116  Q
    |||||| || ||| ||||||||||||| ||| || |||||||||| ||| |||||  |||||||||||||||||||||||||||| | || || ||||      
T  18651776 acataacagcgggttcgaccaccaattctgagtaccaaaactaaacacaacattatgagcttttaaccaccacaaagaagatgatataaccttatctagc 18651677  T
Q  117 atttgtggtaaagcgttgtgcctgtttctaaaaattctatcatttcgatcattccataggacccaaacacactgaagccaaatcaaatggaaaaaagatc 216  Q
    |||||||| |||| | | || || |||||||||||| | ||||| || |||||||| |  ||  |||||||  | | ||||||||| || ||||||||||    
T  18651676 atttgtggcaaagagctttgtctatttctaaaaattttgtcattccgttcattccacaacactgaaacacaaagtaaccaaatcaagtgaaaaaaagatc 18651577  T
Q  217 ttcacaatttc-aaaaacctgcgtaatgaataaattgcaaaaaat 260  Q
     || |  | || || ||||||| |||| |||||||||||| ||||    
T  18651576 gtcgccctctcgaacaacctgcataattaataaattgcaacaaat 18651532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 31 - 115
Target Start/End: Original strand, 13937312 - 13937396
Alignment:
Q  31 tcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaa 115  Q
    |||||||||||||||||||| |||||||||||||  ||||| ||||||| | ||||||||| ||| ||||||||||||| |||||    
T  13937312 tcgaccaccaattatgaataccaaaactaaaaactacattactagctttcatccaccacaaggaacatgattttactttatctaa 13937396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 18789421 - 18789314
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaat 116  Q
    ||||||||| ||||| |||||||| | |||| || |||||||||| ||||||||  |||| ||||||||||||||||||| |||||| ||||| ||||      
T  18789421 acataaaagcgggcttgaccaccagtgatgagtaccaaaactaaatacagcattgctagcctttaaccaccacaaagaagttgatttcactttatctagc 18789322  T
Q  117 atttgtgg 124  Q
    ||||||||    
T  18789321 atttgtgg 18789314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 30 - 172
Target Start/End: Complemental strand, 5734770 - 5734628
Alignment:
Q  30 ctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaatatttgtggtaaag 129  Q
    ||||||||||| | |||| || |||||||||| ||| |||||  ||| ||||||||||||||||||| |||||| ||||| ||||  |||||||| ||||    
T  5734770 ctcgaccaccactgatgagtaccaaaactaaatacaacattacaagcctttaaccaccacaaagaagttgatttcactttatctagcatttgtggcaaag 5734671  T
Q  130 cgttgtgcctgtttctaaaaattctatcatttcgatcattcca 172  Q
       | || || |||||||||||  ||||||| || ||||||||    
T  5734670 aactttgtctatttctaaaaatcttatcattccgttcattcca 5734628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 11462010 - 11462105
Alignment:
Q  14 catacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttacttt 109  Q
    |||||||||||| ||||||||||||||||||||  || ||||| |||| ||  ||||| ||||||| ||||||||||| | |  ||||||||||||    
T  11462010 catacataaaagcgggctcgaccaccaattatgtgtaccaaaattaaagactacattactagctttcaaccaccacaaggtatgtgattttacttt 11462105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 12429174 - 12429065
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaat 116  Q
    |||||||||  || || ||||||| |||||||  || |||||||| |||  |||| ||||||| ||| ||||||||||| ||||||||||||| |||||     
T  12429174 acataaaagcaggttcaaccaccagttatgaaagtcgaaactaaagacaatattactagctttcaactaccacaaagaatatgattttactttatctaac 12429075  T
Q  117 atttgtggta 126  Q
    || |||||||    
T  12429074 atatgtggta 12429065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 12733723 - 12733820
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtcta 114  Q
    ||||||||| |||||||||||||  |  ||| |  |||||||||| ||| ||||| |||| ||||||||||||||||||| |||||| ||||| ||||    
T  12733723 acataaaagcgggctcgaccaccgctgttgagtgccaaaactaaatacaacattactagcctttaaccaccacaaagaagttgatttcactttatcta 12733820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 21167823 - 21167935
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaat 116  Q
    ||||||||| |||||||||||||| |  ||| || |||||||||| ||| ||||  |||| |||| |||||||||||||| || ||| ||||| ||||      
T  21167823 acataaaagcgggctcgaccaccactgttgagtaccaaaactaaatacaacattgctagcctttagccaccacaaagaagttggtttcactttatctagc 21167922  T
Q  117 atttgtggtaaag 129  Q
    |||||||| ||||    
T  21167923 atttgtggcaaag 21167935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 216
Target Start/End: Original strand, 11462159 - 11462210
Alignment:
Q  165 tcattccataggacccaaacacactgaagccaaatcaaatggaaaaaagatc 216  Q
    ||||||||||  ||||||||||||||||||||||||||||| || |||||||    
T  11462159 tcattccataaaacccaaacacactgaagccaaatcaaatgaaataaagatc 11462210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 20883575 - 20883474
Alignment:
Q  14 catacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtct 113  Q
    |||||||||||| |||||| ||   ||||||||  |||||||| |||| ||  ||||| ||||||| ||||||||||| | |  |||||||||||| |||    
T  20883575 catacataaaagcgggctctactggcaattatgtgtatcaaaattaaagactacattactagctttcaaccaccacaaggtatgtgattttactttatct 20883476  T
Q  114 aa 115  Q
    ||    
T  20883475 aa 20883474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 20883424 - 20883376
Alignment:
Q  168 ttccataggacccaaacacactgaagccaaatcaaatggaaaaaagatc 216  Q
    |||||||  ||||| ||||||||||||||||||||||| || |||||||    
T  20883424 ttccataaaacccatacacactgaagccaaatcaaatgaaataaagatc 20883376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 183; Significance: 8e-99; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 9 - 288
Target Start/End: Complemental strand, 26771536 - 26771259
Alignment:
Q  9 atgctcatacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactt 108  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| | ||||||||   |||||||||||||||||||    
T  26771536 atgctcatacataaaagtgggctcgaccaccaattatgagtatcaaaactaaaaacaacattactagttgttaaccac---aaagaagatgattttactt 26771440  T
Q  109 tgtctaatatttgtggtaaagcgttgtgcctgtttctaaaaattctatcatttcgatcattccataggacccaaacacactgaagccaaatcaaatggaa 208  Q
    ||||||| ||||| ||||||| ||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  26771439 tgtctaacatttgaggtaaagagttcttcctgtttctaaaaattctatcattccgatcattccataggacccaaacacactgaagccaaatcaaatggaa 26771340  T
Q  209 aaaagatcttcacaatttcaa-aaacctgcgtaatgaataaattgcaaaaaatagtccgaaatatgttgaggatgaacccc 288  Q
    |||| |||||| | |||| ||  |||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||    
T  26771339 aaaaaatcttcgcgattttaagcaacctgcgtaatgaataaattgcaaaaaattgtccgaaatatgctgaggatcaacccc 26771259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 27 - 260
Target Start/End: Complemental strand, 40931060 - 40930826
Alignment:
Q  27 gggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaatatttgtggta 126  Q
    |||||||||||||| |  ||| || | |||||||||||| |||||  ||| ||||||||||||||||||| |||||| ||||| ||||  |||||||| |    
T  40931060 gggctcgaccaccactgttgagtaccgaaactaaaaacaacattacaagcctttaaccaccacaaagaagttgatttcactttatctagcatttgtggca 40930961  T
Q  127 aagcgttgtgcctgtttctaaaaattctatcatttcgatcattccataggacccaaacacactgaagccaaatcaaatggaaaaaagatcttcacaattt 226  Q
    |||   | || || ||||||||||| ||||||||||| |||||||| |  ||  |||||||  | |||||||||||||| || ||||| | ||||  | |    
T  40930960 aagaactttgtctatttctaaaaatcctatcatttcgttcattccacaacactgaaacacaaagcagccaaatcaaatgaaagaaagaacgtcaccctct 40930861  T
Q  227 c-aaaaacctgcgtaatgaataaattgcaaaaaat 260  Q
    | || ||||||| |||| |||||||||||||||||    
T  40930860 cgaacaacctgcataattaataaattgcaaaaaat 40930826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 260
Target Start/End: Complemental strand, 34333357 - 34333113
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaat 116  Q
    ||||||||| |||||||||||||| | |||| || |||||||||| ||| ||||  |||| ||||||||||||||||||| |||||| ||||| ||||      
T  34333357 acataaaagcgggctcgaccaccactgatgagtaccaaaactaaatacaacattgttagcctttaaccaccacaaagaagttgatttcactttatctagc 34333258  T
Q  117 atttgtggtaaagcgttgtgcctgtttctaaaaattctatcatttcgatcattccataggacccaaacacactgaagccaaatcaaatggaaaaaagatc 216  Q
    |||||||| |||    | || || ||||||||||| |||||||| |  |||||||| |  ||| |||||||  | | ||||||||| ||||| ||||| |    
T  34333257 atttgtggcaaaatactttgtctatttctaaaaatcctatcattcctttcattccacaacaccgaaacacaaagcaaccaaatcaagtggaagaaagacc 34333158  T
Q  217 ttcacaatttc-aaaaacctgcgtaatgaataaattgcaaaaaat 260  Q
     || |  | || || |||||||||||| |||||||||||||||||    
T  34333157 gtcgccctctcgaacaacctgcgtaattaataaattgcaaaaaat 34333113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 963691 - 963607
Alignment:
Q  31 tcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaa 115  Q
    |||||||||||||||||||| |||||||||||||  ||||| ||||||| | ||||||||| ||| ||||||||||||| |||||    
T  963691 tcgaccaccaattatgaataccaaaactaaaaactacattactagctttcatccaccacaaggaacatgattttactttatctaa 963607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 48570589 - 48570483
Alignment:
Q  9 atgctcatacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactt 108  Q
    |||| |||||||| ||| ||||||||||||||||||||| || ||||| |||| ||  ||||| ||||||| ||||||||||  |||  |||||||||||    
T  48570589 atgcccatacatacaagcgggctcgaccaccaattatgagtaccaaaaataaagaccacattattagctttcaaccaccacagggaatttgattttactt 48570490  T
Q  109 tgtctaa 115  Q
    | |||||    
T  48570489 tatctaa 48570483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 31 - 109
Target Start/End: Complemental strand, 50651876 - 50651798
Alignment:
Q  31 tcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttacttt 109  Q
    ||||||||||||| |||||| |||||||||||||  ||||| ||||||| ||||||||||| ||| | |||||||||||    
T  50651876 tcgaccaccaattgtgaataccaaaactaaaaactacattactagctttcaaccaccacaaggaataagattttacttt 50651798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 15312177 - 15312278
Alignment:
Q  14 catacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtct 113  Q
    ||||||||| |||||| |||||||||||  |||| || | |||||||| ||| ||||| ||||||| ||||||||||| ||| ||||||||| ||| |||    
T  15312177 catacataagagtgggttcgaccaccaaagatgagtaccgaaactaaatacaacattactagctttcaaccaccacaaggaatatgattttagtttatct 15312276  T
Q  114 aa 115  Q
    ||    
T  15312277 aa 15312278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 14 - 214
Target Start/End: Original strand, 3140447 - 3140647
Alignment:
Q  14 catacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtct 113  Q
    ||||||||  || ||| |||||||||||||||||||| |||||||||||||  ||||| ||||||| |  ||| ||||  || ||||||||||||| |||    
T  3140447 catacatatgagcgggttcgaccaccaattatgaataccaaaactaaaaactacattactagctttcagtcacgacaagaaacatgattttactttatct 3140546  T
Q  114 aatatttgtggtaaagcgttgtgcctgtttctaaaaattctatcatttcgatcattccataggacccaaacacactgaagccaaatcaaatggaaaaaag 213  Q
    || |  || ||||||| | | |   | ||||  |||| ||||||||| || |||||||| |  | |||||||||| |||||||||| |  ||||||||||    
T  3140547 aacaaatgcggtaaagagctttatttatttcggaaaactctatcattccgctcattccacaatatccaaacacacagaagccaaattagttggaaaaaag 3140646  T
Q  214 a 214  Q
    |    
T  3140647 a 3140647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 2363875 - 2363972
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtcta 114  Q
    ||||||||| |||||||||||||| | |||| |  |||||||||| ||| ||||| |||| |||||||||||||| |||| | |||| ||||| ||||    
T  2363875 acataaaagagggctcgaccaccactgatgagtgccaaaactaaatacaacattactagcctttaaccaccacaacgaagttaatttcactttatcta 2363972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 7312375 - 7312472
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtcta 114  Q
    ||||||||| |||||||||||||| | | || |  |||||||||| ||| ||||| |||| |||||||||||||| |||| |||||| ||||| ||||    
T  7312375 acataaaagcgggctcgaccaccactgacgagtgccaaaactaaatacaacattactagcctttaaccaccacaacgaagttgatttcactttatcta 7312472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 10312976 - 10313061
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgatt 102  Q
    |||| |||| ||| |||||||||||| |||| || |||||||||| ||| | |||   |||||||||||||||||||||| |||||    
T  10312976 acatgaaagcgggttcgaccaccaatgatgagtaccaaaactaaatacaacgttacacgcttttaaccaccacaaagaagttgatt 10313061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 15827309 - 15827394
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgatt 102  Q
    |||| |||| ||| |||| || |||| |||| || |||||||||| ||||||||   ||||||||||||||||||||||| |||||    
T  15827309 acatgaaagcgggttcgatcatcaatgatgagtaccaaaactaaatacagcattgcaagcttttaaccaccacaaagaagttgatt 15827394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 16178544 - 16178620
Alignment:
Q  15 atacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaa 91  Q
    |||||||| || ||| | ||||||||| |||||||| | || ||||||||| ||||| ||||||| |||||||||||    
T  16178544 atacataagagcgggttagaccaccaactatgaataccgaagctaaaaacaacattactagctttcaaccaccacaa 16178620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 10324113 - 10324034
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaag 96  Q
    |||||||||||||||||||||||| | |||| |  |||||||||| ||| ||||| |||| || | ||||||||| ||||    
T  10324113 acataaaagtgggctcgaccaccactgatgagtgccaaaactaaatacaacattactagccttgagccaccacaacgaag 10324034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 108
Target Start/End: Complemental strand, 17098402 - 17098327
Alignment:
Q  33 gaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactt 108  Q
    ||||||||||||||| ||  ||||||||| ||| | ||| ||| ||| ||||||||||| ||| ||||||||||||    
T  17098402 gaccaccaattatgagtactaaaactaaagacatctttactagatttcaaccaccacaaggaatatgattttactt 17098327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 19890436 - 19890475
Alignment:
Q  177 acccaaacacactgaagccaaatcaaatggaaaaaagatc 216  Q
    ||||||||||||||||||||||||||||| || |||||||    
T  19890436 acccaaacacactgaagccaaatcaaatgaaataaagatc 19890475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 19920771 - 19920664
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaat 116  Q
    |||||| || |||||||||||||| | |||  |  |||||||||| ||| ||||  ||||||||||||||||||| | || |||||| ||||| |||||     
T  19920771 acataagagcgggctcgaccaccactgatgggtgccaaaactaaatacaacatttctagcttttaaccaccacaacgcagttgatttcactttatctaac 19920672  T
Q  117 atttgtgg 124  Q
    | ||||||    
T  19920671 aattgtgg 19920664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 7031926 - 7032000
Alignment:
Q  27 gggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgat 101  Q
    ||||||||||||||||| ||| || |||| ||||| |   |||||  |||||| |||||||||||||||||||||    
T  7031926 gggctcgaccaccaattctgagtaccaaagctaaacattacattatgagctttcaaccaccacaaagaagatgat 7032000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 115
Target Start/End: Original strand, 11203407 - 11203515
Alignment:
Q  7 caatgctcatacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttac 106  Q
    |||||| |||||||| ||| ||||||||||||||| ||||  || ||||| |||| ||    ||| ||||||| ||||||||||| | |  |||||||||    
T  11203407 caatgcccatacatagaagcgggctcgaccaccaactatgtgtaccaaaaataaagactatgttactagctttcaaccaccacaaggtatttgattttac 11203506  T
Q  107 tttgtctaa 115  Q
    ||| |||||    
T  11203507 tttatctaa 11203515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 173; Significance: 7e-93; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 9 - 288
Target Start/End: Complemental strand, 17765512 - 17765232
Alignment:
Q  9 atgctcatacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactt 108  Q
    |||| |||||||||||||||||||||||||||| ||||| || |||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||    
T  17765512 atgcccatacataaaagtgggctcgaccaccaactatgagtaccaaaactaaaaacaacattactagcttttaacccccacaaagaagatgattttactt 17765413  T
Q  109 tgtctaatatttgtggtaaagcgttgtgcctgtttctaaaaattctatcatttcgatcattccataggacccaaacacactgaagccaaatcaaatggaa 208  Q
    ||||||| | ||||||||||| | | ||| ||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||| ||    
T  17765412 tgtctaacaattgtggtaaagagctctgcatgtttctaaaaattctaacattccgatcattccataagacccaaacacactgaagccaaatcaaatgaaa 17765313  T
Q  209 aaaagatcttcacaatttcaa-aaacctgcgtaatgaataaattgcaaaaaatagtccgaaatatgttgaggatgaacccc 288  Q
    |||||||||||   |||||||  |||||||||||||||||| ||||||||||| ||| |||||||||||||||| ||||||    
T  17765312 aaaagatcttcgtgatttcaagcaacctgcgtaatgaataagttgcaaaaaatggtctgaaatatgttgaggatcaacccc 17765232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 27 - 208
Target Start/End: Original strand, 28252329 - 28252509
Alignment:
Q  27 gggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaatatttgtggta 126  Q
    ||||||||||||||||||||| || || | |||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  28252329 gggctcgaccaccaattatgagtaccatagctaaaaacaatattactagcttttaaccaccacaaagaagatgattttactttgtctaacatttgtggta 28252428  T
Q  127 aagcgttgtgcctgtttctaaaaattctatcatttcgatcattccataggacccaaacacactgaagccaaatcaaatggaa 208  Q
    ||| | | |||||||||||||||| ||||||  | || | ||||||||  ||||||| ||||| ||||||||||||||||||    
T  28252429 aagagctctgcctgtttctaaaaactctatc-gtccgctaattccataaaacccaaatacactaaagccaaatcaaatggaa 28252509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 271
Target Start/End: Original strand, 15917247 - 15917507
Alignment:
Q  13 tcatacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtc 112  Q
    ||||||||||||| ||||||||||||||||||||| || |||||||||| ||| ||||| ||||||| ||||||||||||||| ||||||||||||| ||    
T  15917247 tcatacataaaagcgggctcgaccaccaattatgagtaccaaaactaaagacaacattactagctttcaaccaccacaaagaatatgattttactttatc 15917346  T
Q  113 taatatttgtggtaaagcgttgtgcctgtttctaaaaattctatcatttcgatcattccataggacccaaacacactgaagccaaatcaaatggaaaaaa 212  Q
    ||| || ||||||| || | | || || || ||||| | ||| ||||| || |||||||| |  ||||||||||| ||||| |||| ||| |||||||||    
T  15917347 taacatatgtggtatagagctttgtctattcctaaatagtctgtcattccgttcattccacaaaacccaaacacattgaagtcaaaccaagtggaaaaaa 15917446  T
Q  213 gatcttcacaattt--caaaaacctgcgtaatgaataaattgcaaaaaatagtccgaaata 271  Q
    |||| || | ||||   |   |||||| |||||||||||||||||||||| ||| ||||||    
T  15917447 gatcgtcgcgattttcgagccacctgcataatgaataaattgcaaaaaatggtctgaaata 15917507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 7 - 171
Target Start/End: Original strand, 41206594 - 41206758
Alignment:
Q  7 caatgctcatacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttac 106  Q
    |||||| || |||| |||| ||| ||||||| ||| ||||| || |||| ||||| ||| |||||  || |||||||||||| |||||||||||||| ||    
T  41206594 caatgcacaaacatgaaagggggttcgaccatcaaatatgagtaccaaagctaaatacaacattacgagattttaaccaccataaagaagatgatttgac 41206693  T
Q  107 tttgtctaatatttgtggtaaagcgttgtgcctgtttctaaaaattctatcatttcgatcattcc 171  Q
    ||| ||||| || |||||||||| | | || || |||||||||||  | |||||||| |||||||    
T  41206694 tttatctaacatgtgtggtaaagagctttgtctatttctaaaaatcatttcatttcgttcattcc 41206758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 12645131 - 12645322
Alignment:
Q  14 catacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtct 113  Q
    ||||||| |||  ||||||||||||||||||||  || ||||| |||| ||  ||||| ||||||||||||||||||| | |   ||||||||||| |||    
T  12645131 catacatgaaaacgggctcgaccaccaattatgtgtaccaaaattaaagaccacattactagcttttaaccaccacaaggtatgagattttactttatct 12645230  T
Q  114 aatatttgtggtaaagcgttgtgcctgtttctaaaaattctatcatttcgatcattccataggacccaaacacactgaagccaaatcaaatg 205  Q
    || |   |||| | ||   | || | ||||||||| |  ||||||||||| ||||||||||  |||||||||||||| ||||||||||||||    
T  12645231 aacaaaagtggcatagaactttgacggtttctaaataacctatcatttcgttcattccataaaacccaaacacactgcagccaaatcaaatg 12645322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 33516334 - 33516228
Alignment:
Q  9 atgctcatacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactt 108  Q
    ||||||||||||| ||| ||||||||||||||||||||| || ||||| |||| ||  | ||| ||||||| ||||||||||  |||  |||||||||||    
T  33516334 atgctcatacatacaagcgggctcgaccaccaattatgagtaccaaaagtaaagaccacgttactagctttcaaccaccacatggaatttgattttactt 33516235  T
Q  109 tgtctaa 115  Q
    | |||||    
T  33516234 tatctaa 33516228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 44472960 - 44473054
Alignment:
Q  21 aaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaa 115  Q
    ||||| ||||||||||||||   |||| || ||||||||||   ||||||| ||||||| ||||||||||||||| ||||||||||||| |||||    
T  44472960 aaaagagggctcgaccaccacgaatgagtaccaaaactaaaggtagcattattagctttcaaccaccacaaagaatatgattttactttatctaa 44473054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 7 - 115
Target Start/End: Original strand, 40176258 - 40176366
Alignment:
Q  7 caatgctcatacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttac 106  Q
    |||||| |||||||| ||| ||||||||||||||||||||| |  ||||| |||| ||  ||||| ||||||| ||||||||||  |||  |||||||||    
T  40176258 caatgcccatacatacaagcgggctcgaccaccaattatgagttccaaaagtaaagaccacattactagctttcaaccaccacatggaatttgattttac 40176357  T
Q  107 tttgtctaa 115  Q
    ||| |||||    
T  40176358 tttatctaa 40176366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 15391738 - 15391839
Alignment:
Q  14 catacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtct 113  Q
    ||||||||| || ||| ||||||||||||||||| || | ||||||||  |||| ||| ||||||| ||||||||||| ||| | ||||| ||||| |||    
T  15391738 catacataagagcgggttcgaccaccaattatgagtaccgaaactaaagtcagctttactagctttcaaccaccacaaggaataagatttaactttatct 15391837  T
Q  114 aa 115  Q
    ||    
T  15391838 aa 15391839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 3400583 - 3400682
Alignment:
Q  18 cataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaata 117  Q
    |||||||||||| ||||| ||||  | ||  |||||| | |||||||  ||||||||||||| ||||||||||| | | ||||||||||||| |||||||    
T  3400583 cataaaagtgggttcgactaccacatgtgtgtatcaacattaaaaactacattaatagctttcaaccaccacaaggtatatgattttactttatctaata 3400682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 214
Target Start/End: Original strand, 4551802 - 4551964
Alignment:
Q  52 caaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaatatttgtggtaaagcgttgtgcctgtttctaaaaat 151  Q
    |||||||||| ||| ||||| |||| |||||||||||||| |||| |||||| ||||| |||| || |||||| | ||   | || || ||||||||||     
T  4551802 caaaactaaatacaacattactagcctttaaccaccacaacgaagttgatttcactttatctagtaattgtggcacagtactttgtctatttctaaaaag 4551901  T
Q  152 tctatcatttcgatcattccataggacccaaacacactgaagccaaatcaaatggaaaaaaga 214  Q
     ||||||||||  |||||||| |  ||| |||||||  | | ||||||||| ||||| |||||    
T  4551902 cctatcatttctttcattccacaacaccgaaacacaaagcaaccaaatcaagtggaagaaaga 4551964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 11000500 - 11000418
Alignment:
Q  9 atgctcatacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaa 91  Q
    ||||||||||||||||| ||||||||||||||| | |||||| ||||| |||| ||    ||| ||||||| |||||||||||    
T  11000500 atgctcatacataaaagcgggctcgaccaccaactgtgaataccaaaaataaagactatgttactagctttcaaccaccacaa 11000418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 23290081 - 23290128
Alignment:
Q  158 atttcgatcattccataggacccaaacacactgaagccaaatcaaatg 205  Q
    |||||| |||||||||| |||||||||||| | |||||||||||||||    
T  23290081 atttcgttcattccatatgacccaaacacaataaagccaaatcaaatg 23290128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 7e-56; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 14 - 279
Target Start/End: Complemental strand, 34137508 - 34137242
Alignment:
Q  14 catacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtct 113  Q
    ||||||||| |  ||||||||||||||||||||| || |||| ||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||    
T  34137508 catacataacaaagggctcgaccaccaattatgagtaccaaagctaaaaacaacattactagcttttaaccaccacaatgaagatgattttactttgtct 34137409  T
Q  114 aatatttgtggtaaagcgttgtgcctgtttctaaaaattctatcatttcgatcattccataggacccaaacacactgaagccaaatcaaatggaaaaaag 213  Q
    || |||||| |||||| | | | | | |||||||||||| | ||||| || |||||| ||| ||||  || |||||||||||||||||||||||  |||     
T  34137408 aacatttgtcgtaaagagctctacttatttctaaaaattatgtcattccgctcattctataagaccgcaatacactgaagccaaatcaaatggagcaaat 34137309  T
Q  214 atcttcacaatttcaaa-aacctgcgtaatgaataaattgcaaaaaatagtccgaaatatgttgagg 279  Q
    |||| |   |||||||| ||||||| |||||||||||||||||||||| |||| ||||||| |||||    
T  34137308 atctacgggatttcaaacaacctgcataatgaataaattgcaaaaaatggtccaaaatatgctgagg 34137242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 254
Target Start/End: Original strand, 13395986 - 13396224
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaat 116  Q
    ||||||||| |||||||||||||| | |||| || |||||||||| ||||||||  |||| ||||||||||||||||||| |||||| ||||| |||||     
T  13395986 acataaaagcgggctcgaccaccactgatgagtaccaaaactaaatacagcattgctagcctttaaccaccacaaagaagttgatttcactttatctaac 13396085  T
Q  117 atttgtggtaaagcgttgtgcctgtttctaaaaattctatcatttcgatcattccataggacccaaacacactgaagccaaatcaaatggaaaaaagatc 216  Q
    |||||||| | ||   | || || ||||||||||| |||||||| |  |||||||| |  ||| |||||||  | | ||||||||| ||||| ||||| |    
T  13396086 atttgtggcagagtactttgtctatttctaaaaatcctatcattcctttcattccacaataccgaaacacaaagcaaccaaatcaagtggaagaaagacc 13396185  T
Q  217 ttcacaatttcaaa-aacctgcgtaatgaataaattgca 254  Q
     || |  | ||||| |||||||||||| |||||||||||    
T  13396186 gtcgccttctcaaacaacctgcgtaattaataaattgca 13396224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 41665911 - 41665673
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaat 116  Q
    ||||||||| |||||||||||||| | |||| || |||||||||| ||| ||||  |||| ||||||||||||||||||| |||||| ||||| |||||     
T  41665911 acataaaagcgggctcgaccaccactgatgagtaccaaaactaaatacaacattgctagcctttaaccaccacaaagaagttgatttcactttatctaaa 41665812  T
Q  117 atttgtggtaaagcgttgtgcctgtttctaaaaattctatcatttcgatcattccataggacccaaacacactgaagccaaatcaaatggaaaaaagatc 216  Q
    |||||||| | ||   | || || ||||||||||| |||||||| |  |||||||| |  ||| |||||||  | | ||||||||| ||||| |||||||    
T  41665811 atttgtggcagagtactttgtctatttctaaaaatcctatcattcctttcattccacaacaccgaaacacaaagcaaccaaatcaagtggaagaaagatc 41665712  T
Q  217 ttcacaatttcaaa-aacctgcgtaatgaataaattgca 254  Q
     || |  | ||||| |||||||||||| |||||||||||    
T  41665711 gtcgccttctcaaacaacctgcgtaattaataaattgca 41665673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 7 - 202
Target Start/End: Original strand, 5181257 - 5181452
Alignment:
Q  7 caatgctcatacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttac 106  Q
    |||||| || |||| |||| |||  |||||||||| ||||| ||  ||| ||||| ||| ||||| || ||||||||||||||||| |||||||||||||    
T  5181257 caatgcccaaacatgaaagcgggtacgaccaccaagtatgagtactaaagctaaatacaacattactaacttttaaccaccacaaataagatgattttac 5181356  T
Q  107 tttgtctaatatttgtggtaaagcgttgtgcctgtttctaaaaattctatcatttcgatcattccataggacccaaacacactgaagccaaatcaa 202  Q
    ||| ||||| || ||||||||||   | |  || |||||||| ||  |||||||||| || ||||| |  ||| ||||||| ||||||||||||||    
T  5181357 tttatctaacatatgtggtaaagaactttctctatttctaaatatcatatcatttcgttcgttccacaaaacctaaacacattgaagccaaatcaa 5181452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 32567806 - 32567637
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaat 116  Q
    ||||||||| |||||||||||||| | |||| ||||||||||||| ||| ||||  |||| ||||||||||||||||||| |||||| || || ||||      
T  32567806 acataaaagcgggctcgaccaccactgatgagtatcaaaactaaatacaacattgctagc-tttaaccaccacaaagaagttgatttcacattatctagc 32567708  T
Q  117 atttgtggtaaagcgttgtgcctgtttctaaaaattctatcatttcgatcattccataggacccaaacaca 187  Q
    |||||||| ||||   | || || ||||||||||| |||||||| |  |||||||| |  |||||||||||    
T  32567707 atttgtggcaaagtactttgtctatttctaaaaatcctatcattcctttcattccacaacacccaaacaca 32567637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 260
Target Start/End: Original strand, 32266162 - 32266406
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaat 116  Q
    ||||||||| |||||||||||||| | |||| || |||||||||| ||| ||||  |||  ||||||||||||| ||||| |||||| || || ||||      
T  32266162 acataaaagcgggctcgaccaccactgatgagtaccaaaactaaatacaacatttctagtctttaaccaccacagagaagttgatttcacattatctagc 32266261  T
Q  117 atttgtggtaaagcgttgtgcctgtttctaaaaattctatcatttcgatcattccataggacccaaacacactgaagccaaatcaaatggaaaaaagatc 216  Q
    |||||||| ||||   | || || ||||||||||| |||||||| |  |||||||| |  |||||||||||  | | |||||| || ||||| ||||| |    
T  32266262 atttgtggcaaagtactttgtctatttctaaaaatcctatcattcctttcattccacaacacccaaacacaaagcaaccaaattaagtggaagaaagacc 32266361  T
Q  217 ttcacaatttc-aaaaacctgcgtaatgaataaattgcaaaaaat 260  Q
      | |  | || || |||||||||||| |||||||||||||||||    
T  32266362 gacgccctctcgaacaacctgcgtaattaataaattgcaaaaaat 32266406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 9922204 - 9922311
Alignment:
Q  22 aaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaatatttg 121  Q
    |||| |||||||||||||| |  ||| || |||||||||||||| |||||  ||| ||||||||||||||||||| |||||| ||||| ||||  |||||    
T  9922204 aaagcgggctcgaccaccactggtgagtaccaaaactaaaaacaacattacaagcctttaaccaccacaaagaagttgatttcactttatctagcatttg 9922303  T
Q  122 tggtaaag 129  Q
    ||| ||||    
T  9922304 tggcaaag 9922311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 12257998 - 12257895
Alignment:
Q  12 ctcatacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgt 111  Q
    ||||||||||| || ||| |||||||||| |||||| || |||||||| ||||| | ||| ||||||| ||||||||||   || ||||||||||||| |    
T  12257998 ctcatacataagagcgggttcgaccaccagttatgagtaccaaaactagaaacaacgttactagctttcaaccaccacatgtaatatgattttactttat 12257899  T
Q  112 ctaa 115  Q
    ||||    
T  12257898 ctaa 12257895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 12265390 - 12265287
Alignment:
Q  12 ctcatacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgt 111  Q
    ||||||||||| || ||| |||||||||| |||||| || |||||||| ||||| | ||| ||||||| ||||||||||   || ||||||||||||| |    
T  12265390 ctcatacataagagcgggttcgaccaccagttatgagtaccaaaactagaaacaacgttactagctttcaaccaccacatgtaatatgattttactttat 12265291  T
Q  112 ctaa 115  Q
    ||||    
T  12265290 ctaa 12265287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 208
Target Start/End: Original strand, 13199713 - 13199912
Alignment:
Q  9 atgctcatacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactt 108  Q
    ||||||||||||||||| ||||||||||||||||||||  || ||||| |||| ||  ||||| |||||||  |||||||||| | |   ||||||||||    
T  13199713 atgctcatacataaaagcgggctcgaccaccaattatgtgtaccaaaattaaagaccacattactagctttcgaccaccacaaggtatgagattttactt 13199812  T
Q  109 tgtctaatatttgtggtaaagcgttgtgcctgtttctaaaaattctatcatttcgatcattccataggacccaaacacactgaagccaaatcaaatggaa 208  Q
    | ||||| |   |||| | ||   | || | ||||||||| |  |  |||||||  ||||||||||  || ||||||||||| |||||||||||||||||    
T  13199813 tatctaacaaaagtggcatagaactttgacggtttctaaataacccgtcatttccttcattccataaaacgcaaacacactgcagccaaatcaaatggaa 13199912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 7923984 - 7924081
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtcta 114  Q
    ||||||||| |||||||||||||| | |||| |  |||||||||| ||| ||||| |||| |||||||||||||| |||| | |||| ||||| ||||    
T  7923984 acataaaagagggctcgaccaccactgatgagtgccaaaactaaatacaacattactagcctttaaccaccacaacgaagttaatttcactttatcta 7924081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 2529480 - 2529558
Alignment:
Q  13 tcatacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaa 91  Q
    |||||||| |||| |||||||||||||||| |||  || ||||| |||||||  ||||| ||||||| |||||||||||    
T  2529480 tcatacatgaaagcgggctcgaccaccaatcatgtgtaccaaaattaaaaaccacattactagctttcaaccaccacaa 2529558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 254
Target Start/End: Original strand, 20496682 - 20496920
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaat 116  Q
    ||||||||| |||||||||||||| | |||  |  |||||||||| ||| ||||| |||| |||||||||||||| |||| | |||| ||||| |||| |    
T  20496682 acataaaagagggctcgaccaccactgatgtgtgccaaaactaaatacaacattactagcctttaaccaccacaacgaagttaatttcactttatctagt 20496781  T
Q  117 atttgtggtaaagcgttgtgcctgtttctaaaaattctatcatttcgatcattccataggacccaaacacactgaagccaaatcaaatggaaaaaagatc 216  Q
    | ||| || | ||   | || || ||||||||||  |||||||| |  |||||||| || ||| |||||||  | | ||||||||| ||||| ||||| |    
T  20496782 aattgaggcacagtactttgtctatttctaaaaagcctatcattcctttcattccacagcaccgaaacacaaagcaaccaaatcaagtggaagaaagacc 20496881  T
Q  217 ttcacaatttc-aaaaacctgcgtaatgaataaattgca 254  Q
     || |  | || || ||||||| ||||||||||||||||    
T  20496882 gtcgccctctcgaacaacctgcataatgaataaattgca 20496920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 95
Target Start/End: Complemental strand, 29733500 - 29733414
Alignment:
Q  9 atgctcatacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaa 95  Q
    |||| |||||||| ||| || |||||||||||| ||||| || ||||| |||| ||  ||||| ||||||| |||||||||||||||    
T  29733500 atgcacatacatacaagcggtctcgaccaccaactatgagtaccaaaagtaaagaccacattactagctttcaaccaccacaaagaa 29733414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 8299401 - 8299498
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtcta 114  Q
    ||||||||| |||||||||||||| | |||| |  |||||||||| ||| ||||| |||| |||| ||||||||| |||| | |||| ||||| ||||    
T  8299401 acataaaagagggctcgaccaccactgatgagtgccaaaactaaatacaacattactagcctttagccaccacaacgaagttaatttcactttatcta 8299498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 25090124 - 25090176
Alignment:
Q  156 tcatttcgatcattccataggacccaaacacactgaagccaaatcaaatggaa 208  Q
    ||||| || ||||||||||  |||||||||||||||||||||||||| |||||    
T  25090124 tcattccgttcattccatataacccaaacacactgaagccaaatcaagtggaa 25090176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 25089976 - 25090083
Alignment:
Q  9 atgctcatacataaaagtgggctcgaccaccaattatgaata-tcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttact 107  Q
    |||| |||||||  ||| ||||||||||||||||||||| ||  ||||| |||| ||  ||||| ||||||| | ||||||||| |||  ||||||||||    
T  25089976 atgcccatacatgcaagcgggctcgaccaccaattatgagtacccaaaagtaaagaccacattactagctttcagccaccacaaggaatttgattttact 25090075  T
Q  108 ttgtctaa 115  Q
    || |||||    
T  25090076 ttatctaa 25090083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 13879893 - 13879844
Alignment:
Q  153 ctatcatttcgatcattccataggacccaaacacactgaagccaaatcaa 202  Q
    |||||||| || |||||||| |  ||||||||||||||||||||||||||    
T  13879893 ctatcattccgttcattccaaataacccaaacacactgaagccaaatcaa 13879844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 2169935 - 2170035
Alignment:
Q  14 catacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtct 113  Q
    |||||||||||| ||||||||||||||| ||||  || ||||| |||| ||    ||| ||||||| ||||||||||| | |  |||||||||||| |||    
T  2169935 catacataaaagcgggctcgaccaccaactatgtgtaccaaaaataaagactaagttactagctttcaaccaccacaaggtatgtgattttactttatct 2170034  T
Q  114 a 114  Q
    |    
T  2170035 a 2170035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 7e-53; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 27 - 208
Target Start/End: Complemental strand, 23163163 - 23162983
Alignment:
Q  27 gggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaatatttgtggta 126  Q
    ||||||||||||||||||||| || || | ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||| ||    
T  23163163 gggctcgaccaccaattatgagtaccatagctaaaaacaacattactagcttttaaccaccacaaagaagatgattttactttgtct-acatttgtgata 23163065  T
Q  127 aagcgttgtgcctgtttctaaaaattctatcatttcgatcattccataggacccaaacacactgaagccaaatcaaatggaa 208  Q
    ||| | | |||||||||||||||| ||||||||| || ||||||||||  ||||||| ||||||||||||||||||||||||    
T  23163064 aagagctctgcctgtttctaaaaactctatcattccgctcattccataaaacccaaatacactgaagccaaatcaaatggaa 23162983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 27 - 273
Target Start/End: Complemental strand, 11587730 - 11587483
Alignment:
Q  27 gggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaatatttgtggta 126  Q
    ||||||||| | ||| ||||| || |||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  11587730 gggctcgactatcaactatgagtaccaaagctaaaaacaacattactagcttttaaccaccacaaagaagatgattttactttgtctaacatttgtggta 11587631  T
Q  127 aagcgttgtgcctgtttctaaaaattctatcatttcgatcattccataggacccaaacacactgaagccaaatcaaatggaaaaaagatcttcacaattt 226  Q
    |||   | | | | |||||||||||| | |||||| | |||||||||| ||||  ||  | |||||||||||||||||| || |||||||| |   || |    
T  11587630 aagaactctccttatttctaaaaattttgtcattttgttcattccataagaccgcaattccctgaagccaaatcaaatgaaataaagatctacgggatgt 11587531  T
Q  227 c-aaaaacctgcgtaatgaataaattgcaaaaaatagtccgaaatatg 273  Q
    | |   |||||| |||||||| ||||||||||||| ||||||||||||    
T  11587530 cgagctacctgcataatgaatgaattgcaaaaaatggtccgaaatatg 11587483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 9 - 216
Target Start/End: Complemental strand, 17402236 - 17402029
Alignment:
Q  9 atgctcatacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactt 108  Q
    |||||||| |||||||| ||||||||||||||||||||| || ||||   ||  ||| ||||| |||| |||||| ||||||||||||||||||||||||    
T  17402236 atgctcatgcataaaagcgggctcgaccaccaattatgagtaccaaagtgaactacaacattactagcctttaactaccacaaagaagatgattttactt 17402137  T
Q  109 tgtctaatatttgtggtaaagcgttgtgcctgtttctaaaaattctatcatttcgatcattccataggacccaaacacactgaagccaaatcaaatggaa 208  Q
    | ||||| || |||||||||| | | |  ||||||||||| |  |||||||| || |||||||| |  || ||||||||| ||||||||||||| |||||    
T  17402136 tatctaacatatgtggtaaagagctttttctgtttctaaatagcctatcattccgttcattccacaaaactcaaacacaccgaagccaaatcaagtggaa 17402037  T
Q  209 aaaagatc 216  Q
    || |||||    
T  17402036 aagagatc 17402029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 19754861 - 19754968
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaat 116  Q
    ||||||||| |||||||||||||| | |||| ||  ||||||||| ||||||||  |||| ||||||||||||||||||| |||||| ||||| |||||     
T  19754861 acataaaagcgggctcgaccaccactgatgagtacaaaaactaaatacagcattgctagcctttaaccaccacaaagaagttgatttcactttatctaac 19754960  T
Q  117 atttgtgg 124  Q
    ||||||||    
T  19754961 atttgtgg 19754968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 19784945 - 19784838
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaat 116  Q
    ||||||||| |||||||||||||| | |||| ||  ||||||||| ||||||||  |||| ||||||||||||||||||| |||||| ||||| |||||     
T  19784945 acataaaagcgggctcgaccaccactgatgagtacaaaaactaaatacagcattgctagcctttaaccaccacaaagaagttgatttcactttatctaac 19784846  T
Q  117 atttgtgg 124  Q
    ||||||||    
T  19784845 atttgtgg 19784838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 47686437 - 47686325
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaat 116  Q
    ||||||||| |||||||||||||| | |||| |  |||||||||| ||| ||||  |||| ||||||||||||||||||| |||||| ||||||||||      
T  47686437 acataaaagcgggctcgaccaccactgatgagtgccaaaactaaatacaacattgctagcctttaaccaccacaaagaagttgatttcactttgtctagc 47686338  T
Q  117 atttgtggtaaag 129  Q
    |||||||| ||||    
T  47686337 atttgtggcaaag 47686325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 27 - 114
Target Start/End: Original strand, 7403520 - 7403607
Alignment:
Q  27 gggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtcta 114  Q
    ||||||||||||||||||||||||||||| ||||| ||| ||||   || ||||||||||||||||||| ||||||| ||||| ||||    
T  7403520 gggctcgaccaccaattatgaatatcaaagctaaatacaacattgcgagtttttaaccaccacaaagaatatgatttcactttatcta 7403607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 31 - 214
Target Start/End: Original strand, 46145287 - 46145470
Alignment:
Q  31 tcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaatatttgtggtaaagc 130  Q
    |||||||||||||||||||| |||||||||||||  ||||| || |||| | ||| || || ||| ||||||||||||| ||||| |  || |||||||     
T  46145287 tcgaccaccaattatgaataccaaaactaaaaactacattactaactttcatccatcataaggaacatgattttactttatctaacaaatgcggtaaaga 46145386  T
Q  131 gttgtgcctgtttctaaaaattctatcatttcgatcattccataggacccaaacacactgaagccaaatcaaatggaaaaaaga 214  Q
    | ||||  | ||||  |||| ||||||||| || |||||||| |  | ||||||||||  ||||||||| | ||||||||||||    
T  46145387 gctgtgtttatttcagaaaactctatcattccgctcattccacaatatccaaacacacataagccaaattagatggaaaaaaga 46145470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 8890632 - 8890698
Alignment:
Q  28 ggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaaga 94  Q
    |||||||||||||||||||| || |||||||||| |||||||||  |||||||||||||||||||||    
T  8890632 ggctcgaccaccaattatgagtaccaaaactaaatacagcattacaagcttttaaccaccacaaaga 8890698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 19740587 - 19740484
Alignment:
Q  12 ctcatacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgt 111  Q
    ||||||||||  || ||| || |||||||||||||| || ||||| |||||||| ||||| ||||||| | ||||||||| ||| ||||||||||||| |    
T  19740587 ctcatacatatgagcgggttcaaccaccaattatgagtaccaaaagtaaaaacaacattactagctttcagccaccacaaggaatatgattttactttat 19740488  T
Q  112 ctaa 115  Q
    ||||    
T  19740487 ctaa 19740484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 15739819 - 15739931
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaat 116  Q
    ||||||||| |||||||||||||| |  ||| || |||||||||| ||| ||||  |||| |||| |||||||||||||| |||||| ||||| ||||      
T  15739819 acataaaagcgggctcgaccaccactgttgagtaccaaaactaaatacaacattgctagcctttagccaccacaaagaagttgatttcactttatctagc 15739918  T
Q  117 atttgtggtaaag 129  Q
    |||||||| ||||    
T  15739919 atttgtggcaaag 15739931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 172
Target Start/End: Complemental strand, 20788822 - 20788666
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaat-agcttttaaccaccacaaagaagatgattttactttgtctaa 115  Q
    |||||| || ||| ||||||||||||| ||| || |||| ||||| ||| |||| || |||||||||||||||||||||||||||| | || || ||||     
T  20788822 acataacagcgggttcgaccaccaattctgagtaccaaagctaaacacaacatttatgagcttttaaccaccacaaagaagatgatataaccttatctag 20788723  T
Q  116 tatttgtggtaaagcgttgtgcctgtttctaaaaattctatcatttcgatcattcca 172  Q
     |||||||| |||| | | || || |||||||||||  | ||||| || ||||||||    
T  20788722 catttgtggcaaagagctttgtctatttctaaaaatcatgtcattccgttcattcca 20788666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 156 - 260
Target Start/End: Complemental strand, 2822440 - 2822335
Alignment:
Q  156 tcatttcgatcattccataggacccaaacacactgaagccaaatcaaatggaaaaaagatcttcacaatttcaa-aaacctgcgtaatgaataaattgca 254  Q
    ||||| || ||||||||||  |||||||||||||||||||||||||| ||||| |||||||  | | |||||||   |||||| || |||||||||||||    
T  2822440 tcattccgttcattccataaaacccaaacacactgaagccaaatcaagtggaagaaagatcgacgcgatttcaagccacctgcatattgaataaattgca 2822341  T
Q  255 aaaaat 260  Q
     |||||    
T  2822340 taaaat 2822335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 5790638 - 5790521
Alignment:
Q  9 atgctcatacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactt 108  Q
    |||| ||||||||| || ||| ||||||||||| |||||||| | || ||||| ||| ||||| ||||||| ||||||||||| ||| | ||||| ||||    
T  5790638 atgcccatacataagagcgggttcgaccaccaactatgaataccgaagctaaacacaacattactagctttcaaccaccacaacgaataggatttaactt 5790539  T
Q  109 tgtctaatatttgtggta 126  Q
      ||||| | ||||||||    
T  5790538 gatctaacagttgtggta 5790521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 23643133 - 23643036
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtcta 114  Q
    ||||||||| |||||||||||||| | |||| |  |||||||||| ||| ||||| |||| |||||||||||||| |||| | |||| ||||| ||||    
T  23643133 acataaaagagggctcgaccaccactgatgagtgccaaaactaaatacaacattactagcctttaaccaccacaacgaagttaatttcactttatcta 23643036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 125
Target Start/End: Original strand, 48241969 - 48242085
Alignment:
Q  9 atgctcatacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactt 108  Q
    |||| ||||||||| || ||  || |||||||| |||||||| | || ||||||||| ||||| || |||| ||||| ||||| ||| ||||||||||||    
T  48241969 atgcccatacataagagcggattcaaccaccaactatgaataccgaagctaaaaacaacattactaactttcaaccaacacaaggaatatgattttactt 48242068  T
Q  109 tgtctaatatttgtggt 125  Q
    | ||||| || ||||||    
T  48242069 tatctaacatatgtggt 48242085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 160233 - 160126
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaat 116  Q
    ||||||||| |||||||||||||| | |||  |  |||||||||| ||| ||||| |||| |||||||||||||| |||| | |||| ||||| |||| |    
T  160233 acataaaagagggctcgaccaccactgatgtttgccaaaactaaatacaacattactagcctttaaccaccacaacgaagttaatttcactttatctagt 160134  T
Q  117 atttgtgg 124  Q
    | ||||||    
T  160133 aattgtgg 160126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 47418403 - 47418482
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaag 96  Q
    |||||||||||||||||||||||| | |||| |  |||||||||| ||| ||||| |||| |||| ||||||||| ||||    
T  47418403 acataaaagtgggctcgaccaccactgatgagtgccaaaactaaatacaacattactagcctttagccaccacaacgaag 47418482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 55726143 - 55726061
Alignment:
Q  9 atgctcatacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaa 91  Q
    |||| ||| ||| |||| |||||||||||||||||||| ||| ||||| |||| ||  ||||| ||||||| |||||||||||    
T  55726143 atgcccatgcatgaaagcgggctcgaccaccaattatgtataccaaaattaaagaccacattactagctttcaaccaccacaa 55726061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 48311685 - 48311786
Alignment:
Q  14 catacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtct 113  Q
    |||||||| ||| ||||||||||||||||||||| || ||||| |||| ||  ||||| ||||||| | ||| |||| || |  |||||||||||| |||    
T  48311685 catacatacaagcgggctcgaccaccaattatgagtaccaaaagtaaagaccacattactagctttcagccatcacagagtatttgattttactttatct 48311784  T
Q  114 aa 115  Q
    ||    
T  48311785 aa 48311786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 36223617 - 36223533
Alignment:
Q  31 tcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaa 115  Q
    |||||||||| || |||||| |||||||||||||  ||||| ||||||| | | | ||||| ||| ||||||||||||| |||||    
T  36223617 tcgaccaccagttgtgaataccaaaactaaaaactacattactagctttcagctatcacaaggaatatgattttactttatctaa 36223533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 20002476 - 20002515
Alignment:
Q  177 acccaaacacactgaagccaaatcaaatggaaaaaagatc 216  Q
    ||||||||||||||||||||||||||||| || |||||||    
T  20002476 acccaaacacactgaagccaaatcaaatgaaataaagatc 20002515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 2822582 - 2822481
Alignment:
Q  14 catacataaaagtgggctcgaccaccaattatgaatatcaaaactaaa-aacagcattaatagcttttaaccaccacaaagaagatgattttactttgtc 112  Q
    |||||||| ||| ||||||||||| ||| ||||| || ||||| |||| |||| ||||| ||||||| |||||||||| ||||  |||||| ||||| ||    
T  2822582 catacatacaagcgggctcgaccatcaactatgagtaccaaaagtaaagaaca-cattactagctttcaaccaccacagagaatttgatttcactttatc 2822484  T
Q  113 taa 115  Q
    |||    
T  2822483 taa 2822481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 54483709 - 54483603
Alignment:
Q  9 atgctcatacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactt 108  Q
    |||| |||||||| ||| ||| ||||||||||||||||| || ||||  |||| ||  ||||| ||||||| | ||||||||| | |  |||||||||||    
T  54483709 atgcccatacatacaagcggggtcgaccaccaattatgagtaccaaatgtaaagaccacattactagctttcagccaccacaaggtatttgattttactt 54483610  T
Q  109 tgtctaa 115  Q
    | |||||    
T  54483609 tatctaa 54483603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 13271433 - 13271336
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtcta 114  Q
    |||||||||  ||||||||||||| | |||| |  ||||| |||| ||| ||||| |||| |||||||||||||| |||| | |||| ||||| ||||    
T  13271433 acataaaagatggctcgaccaccactgatgagtgccaaaaataaatacaacattactagcctttaaccaccacaacgaagttaatttcactttatcta 13271336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 16427147 - 16427232
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgatt 102  Q
    |||| |||| ||| |||||||||||| |||| || |||||||||| ||| | |||   |||||||| ||||||||||||| |||||    
T  16427147 acatgaaagcgggttcgaccaccaatgatgagtaccaaaactaaatacatctttacatgcttttaatcaccacaaagaagttgatt 16427232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 48311824 - 48311873
Alignment:
Q  153 ctatcatttcgatcattccataggacccaaacacactgaagccaaatcaa 202  Q
    |||||||| || |||||||| |  ||||||||||||||||||||||||||    
T  48311824 ctatcattccgttcattccaaataacccaaacacactgaagccaaatcaa 48311873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 54483565 - 54483516
Alignment:
Q  153 ctatcatttcgatcattccataggacccaaacacactgaagccaaatcaa 202  Q
    |||||||| || |||||||| |  ||||||||||||||||||||||||||    
T  54483565 ctatcattccgttcattccaaataacccaaacacactgaagccaaatcaa 54483516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 5143014 - 5143046
Alignment:
Q  14 catacataaaagtgggctcgaccaccaattatg 46  Q
    |||||||||||| ||||||||||||||||||||    
T  5143014 catacataaaagcgggctcgaccaccaattatg 5143046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 3e-49; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 7 - 218
Target Start/End: Original strand, 29142388 - 29142599
Alignment:
Q  7 caatgctcatacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttac 106  Q
    |||||| ||||||||| ||  |||||||||| |||||| || || || | ||||||||| ||||| |||||||||||||||||||||| |||||||||||    
T  29142388 caatgcccatacataacagatggctcgaccatcaattaagagtaccagagctaaaaacaacattattagcttttaaccaccacaaagatgatgattttac 29142487  T
Q  107 tttgtctaatatttgtggtaaagcgttgtgcctgtttctaaaaattctatcatttcgatcattccataggacccaaacacactgaagccaaatcaaatgg 206  Q
    ||||||||| |||||||||||||   | |||||| |||| |||||| |||||||  |||||||||||| |||||||  |||| |||| ||||||||||||    
T  29142488 tttgtctaacatttgtggtaaagaactctgcctgcttctgaaaattatatcattatgatcattccataagacccaactacaccgaagacaaatcaaatgg 29142587  T
Q  207 aaaaaagatctt 218  Q
    ||||||||||||    
T  29142588 aaaaaagatctt 29142599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 7 - 260
Target Start/End: Complemental strand, 19255675 - 19255421
Alignment:
Q  7 caatgctcatacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttac 106  Q
    |||||| || |||| |||| ||||||||||||||| ||||| || |||||||||| ||| |||||  || ||||||||||||||||||||||||||| ||    
T  19255675 caatgcccaaacatgaaagcgggctcgaccaccaaatatgagtaccaaaactaaatacaacattatgaggttttaaccaccacaaagaagatgatttgac 19255576  T
Q  107 tttgtctaatatttgtggtaaagcgttgtgcctgtttctaaaaattctatcatttcgatcattccataggacccaaacacactgaagccaaatcaaatgg 206  Q
    ||| ||||| || ||||| |||| | | |  || |||||||||||  | ||||| || |||||||| |  ||| |||||||  | | ||||||||| |||    
T  19255575 tttatctaacatatgtggcaaagagctttttctatttctaaaaatattgtcattccgttcattccacaacaccgaaacacaaagcaaccaaatcaagtgg 19255476  T
Q  207 aaaaaagatcttcacaatttc-aaaaacctgcgtaatgaataaattgcaaaaaat 260  Q
    ||||| |||| || |||| || || |||||||||||| |||||||||||||||||    
T  19255475 aaaaatgatcgtcgcaatctcgaacaacctgcgtaattaataaattgcaaaaaat 19255421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 42927729 - 42927841
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaat 116  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||| ||| |||||  |||||||||||||||||||||||||||||| ||||| ||||      
T  42927729 acataaaagtgggctcgaccaccaattatgagtatcaaagctaaatacaacattacgagcttttaaccaccacaaagaagatgatttaactttatctagc 42927828  T
Q  117 atttgtggtaaag 129  Q
    |||||||| ||||    
T  42927829 atttgtggcaaag 42927841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 22 - 214
Target Start/End: Complemental strand, 35984327 - 35984136
Alignment:
Q  22 aaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaatatttg 121  Q
    ||||||||||||||||||| | |||| || |||||||||||||| |||||  ||| ||||||||||||||||||| |||||| ||||| ||||  |||||    
T  35984327 aaagtgggctcgaccaccactgatgagtaccaaaactaaaaacaacattacaagcctttaaccaccacaaagaagttgatttcactttatctagcatttg 35984228  T
Q  122 tggtaaagcgttgtgcctgtttctaaaaattctatcatttcgatcattccataggacccaaacacactgaagccaaatcaaatggaaaaaaga 214  Q
    ||| ||||   | || || ||||| ||||| |||||||| || |||||||| |  ||| |||||||  | |||||||||||||| || |||||    
T  35984227 tggcaaagaactttgtctatttct-aaaatcctatcattccgttcattccacaacaccgaaacacaaagcagccaaatcaaatgaaagaaaga 35984136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 26072488 - 26072594
Alignment:
Q  14 catacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtct 113  Q
    ||||||||| || ||| ||||||||||||||||| |||| |||||||| ||| ||||| ||||||| ||||||||||| ||| | ||||||||||| |||    
T  26072488 catacataagagcgggttcgaccaccaattatgagtatcgaaactaaagacaacattactagctttcaaccaccacaaggaataagattttactttatct 26072587  T
Q  114 aatattt 120  Q
    || ||||    
T  26072588 aacattt 26072594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 22 - 172
Target Start/End: Complemental strand, 28536212 - 28536062
Alignment:
Q  22 aaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaatatttg 121  Q
    |||| |||||||||||||| | |||| || |||||||||||||| |||||  ||| ||||||||||||||||| | |||||| ||||| ||||  |||||    
T  28536212 aaagcgggctcgaccaccactgatgagtaccaaaactaaaaacaacattacaagcctttaaccaccacaaagacgttgatttcactttatctagcatttg 28536113  T
Q  122 tggtaaagcgttgtgcctgtttctaaaaattctatcatttcgatcattcca 172  Q
    ||| ||||   |  | || ||||||||||| ||||||||||| ||||||||    
T  28536112 tggcaaagaacttcgtctatttctaaaaatcctatcatttcgttcattcca 28536062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 31 - 260
Target Start/End: Original strand, 32228416 - 32228646
Alignment:
Q  31 tcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaatatttgtggtaaagc 130  Q
    |||| |||||||||||| || |||||||||||||| ||||| ||||||| |||||||||||| || ||||||||||||| ||||| || || |||| ||     
T  32228416 tcgatcaccaattatgagtaccaaaactaaaaacaacattactagctttcaaccaccacaaaaaatatgattttactttatctaacatatgcggtagaga 32228515  T
Q  131 gttgtgcctgtttctaaaaattctatcatttcgatcattccataggacccaaacacactgaagccaaatcaaatggaaaaaagatcttcacaatttcaaa 230  Q
    | | ||  | ||||| |||| | ||||||| || ||| |||| |  | |||||||||| | |||||||| | ||||||||| || | || |  | |||||    
T  32228516 gctttgtttatttctgaaaactttatcattccgctcagtccacaaaatccaaacacacaggagccaaattagatggaaaaaggaacgtcgcgctctcaaa 32228615  T
Q  231 -aacctgcgtaatgaataaattgcaaaaaat 260  Q
     ||||||| |||| |||||||||||| ||||    
T  32228616 caacctgcataattaataaattgcaagaaat 32228646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 17 - 260
Target Start/End: Original strand, 23237981 - 23238225
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaat 116  Q
    ||||||||| |||||||||||||| | |||| || |||||||||||||| ||||  |||| ||||||||||||||||||| |||||| || || ||||      
T  23237981 acataaaagcgggctcgaccaccactgatgagtaccaaaactaaaaacaacattgctagcctttaaccaccacaaagaagttgatttcacattatctagc 23238080  T
Q  117 atttgtggtaaagcgttgtgcctgtttctaaaaattctatcatttcgatcattccataggacccaaacacactgaagccaaatcaaatggaaaaaagatc 216  Q
    || ||||| ||||   | || || ||||||||||| |||||||| |  |||||||| |  ||| |||||||  | | |||||| || ||||| ||||| |    
T  23238081 atctgtggcaaagtactttgtctatttctaaaaatcctatcattcctttcattccacaacaccaaaacacaaagcaaccaaattaagtggaagaaagacc 23238180  T
Q  217 ttcacaatttc-aaaaacctgcgtaatgaataaattgcaaaaaat 260  Q
      | |  | || || |||||||||||| |||||||||||||||||    
T  23238181 gacgccctctcgaacaacctgcgtaattaataaattgcaaaaaat 23238225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 31 - 211
Target Start/End: Original strand, 33169270 - 33169450
Alignment:
Q  31 tcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaatatttgtggtaaagc 130  Q
    ||||||||||||||| |||| |||||||||||||  ||||| ||||||| | ||||||||| ||| ||||||||||||| ||||| |  || |||||||     
T  33169270 tcgaccaccaattataaataccaaaactaaaaactacattactagctttcatccaccacaaggaacatgattttactttatctaacaaatgcggtaaaga 33169369  T
Q  131 gttgtgcctgtttctaaaaattctatcatttcgatcattccataggacccaaacacactgaagccaaatcaaatggaaaaa 211  Q
    | | |   | ||||  |||| ||||||||| || |||||||| |  | |||||||||| |||||||||| | |||||||||    
T  33169370 gctatatttatttcggaaaactctatcattccgctcattccacaatatccaaacacacagaagccaaattagatggaaaaa 33169450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 18359635 - 18359433
Alignment:
Q  14 catacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtct 113  Q
    |||||||||||| || ||||| || ||||||||  || ||||| |||| ||  ||||| ||||||| ||||||||||||| |  |||||||||||| |||    
T  18359635 catacataaaagcggactcgatcatcaattatgtgtaccaaaattaaagactacattactagctttcaaccaccacaaagtatgtgattttactttatct 18359536  T
Q  114 aatatttgtggtaaagcgttgtgcctgtttctaaaaattctatcatttcgatcattccataggacccaaacacactgaagccaaatcaaatggaaaaaag 213  Q
    || | | |||||| ||   | || | ||| | ||| |  || ||||| || ||||||||||  ||||||||||||||||||||||||||||| || ||||    
T  18359535 aacaatagtggtatagaactttgacggttccgaaataacctgtcattccgttcattccataaaacccaaacacactgaagccaaatcaaatgaaagaaag 18359436  T
Q  214 atc 216  Q
    |||    
T  18359435 atc 18359433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 260
Target Start/End: Original strand, 25824609 - 25824853
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaat 116  Q
    |||| |||| ||||||||||||||   |||| || |||||||||| ||| |||||  ||| ||||||||||||||||||| |||||| ||||| ||||      
T  25824609 acatgaaagcgggctcgaccaccaccgatgagtaccaaaactaaatacaacattacaagcctttaaccaccacaaagaagttgatttcactttatctagc 25824708  T
Q  117 atttgtggtaaagcgttgtgcctgtttctaaaaattctatcatttcgatcattccataggacccaaacacactgaagccaaatcaaatggaaaaaagatc 216  Q
    ||||| || ||||     || || ||||||||||| ||||||||  | |||||||| |  ||| |||||||  | |||||||||||||| || ||||| |    
T  25824709 atttgaggcaaagaacattgtctatttctaaaaatcctatcattctgttcattccacaacaccgaaacacaaagcagccaaatcaaatgaaagaaagaac 25824808  T
Q  217 ttcacaatttc-aaaaacctgcgtaatgaataaattgcaaaaaat 260  Q
     || |  | || || ||||||| |||| |||||||||||||||||    
T  25824809 gtcgccctctcgaacaacctgcataattaataaattgcaaaaaat 25824853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 172
Target Start/End: Original strand, 31641360 - 31641510
Alignment:
Q  22 aaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaatatttg 121  Q
    |||| |||||||||||||| |  ||| || |||||||||| ||| |||||  ||| |||||||||||||| |||| |||||| ||||| ||||  |||||    
T  31641360 aaagcgggctcgaccaccactggtgagtaccaaaactaaatacaacattacaagcctttaaccaccacaacgaagttgatttcactttatctagcatttg 31641459  T
Q  122 tggtaaagcgttgtgcctgtttctaaaaattctatcatttcgatcattcca 172  Q
    ||| ||||   | || || ||||||||||| |||||||| || ||||||||    
T  31641460 tggcaaagaactttgtctatttctaaaaatcctatcattccgttcattcca 31641510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 12824797 - 12824894
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtcta 114  Q
    ||||||||| |||||||||||||| | |||| |  |||||||||| ||| ||||| |||| |||||||||||||| |||| |||||| ||||| ||||    
T  12824797 acataaaagcgggctcgaccaccactgatgagtgccaaaactaaatacaacattactagcctttaaccaccacaacgaagttgatttcactttatcta 12824894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 26019527 - 26019431
Alignment:
Q  9 atgctcatacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgatttta 105  Q
    |||| ||||||||||||||| ||||||||||||||||| ||  ||||| ||||||   ||||| || |||| ||||||||||||||  |||||||||    
T  26019527 atgcccatacataaaagtggactcgaccaccaattatgcattccaaaattaaaaattacattactaactttcaaccaccacaaagagcatgatttta 26019431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 8227624 - 8227710
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattt 103  Q
    ||||||||| |||||||||||||| | |||| || |||||||||| ||| ||||  |||| ||||||||||||||||| | ||||||    
T  8227624 acataaaagcgggctcgaccaccactgatgagtaccaaaactaaatacaacattgctagcctttaaccaccacaaagaggttgattt 8227710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 8941936 - 8941862
Alignment:
Q  31 tcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgatttta 105  Q
    |||||||||||||||||||| |||||||||||||  ||||| ||||||| | ||||||||| | | |||||||||    
T  8941936 tcgaccaccaattatgaataccaaaactaaaaactacattactagctttcagccaccacaaggtacatgatttta 8941862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 156 - 257
Target Start/End: Complemental strand, 26019389 - 26019287
Alignment:
Q  156 tcatttcgatcattccataggacccaaacacactgaagccaaatcaaatggaaaaaagatcttcacaatttca-aaaacctgcgtaatgaataaattgca 254  Q
    |||||||| |||||||| |  || |||||||||||||||||||||||||| || |||||||  | |  ||||| |||||||||||| || ||||||||||    
T  26019389 tcatttcgttcattccacaaaactcaaacacactgaagccaaatcaaatgaaataaagatcgacgcgctttcagaaaacctgcgtattggataaattgca 26019290  T
Q  255 aaa 257  Q
    |||    
T  26019289 aaa 26019287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 52 - 126
Target Start/End: Complemental strand, 27166459 - 27166385
Alignment:
Q  52 caaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaatatttgtggta 126  Q
    |||||||||| | | ||||| ||||||| ||||||||||||||| ||||||||||||| ||||| || |||||||    
T  27166459 caaaactaaagataacattactagctttcaaccaccacaaagaatatgattttactttatctaacatatgtggta 27166385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 12820491 - 12820394
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtcta 114  Q
    ||||||||| |||||||||||||| | |||| |  |||||||||| ||| |||||  ||| |||||||||||||| |||| |||||| ||||| ||||    
T  12820491 acataaaagcgggctcgaccaccactgatgagtgccaaaactaaatacaacattaccagcctttaaccaccacaacgaagttgatttcactttatcta 12820394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 24407548 - 24407649
Alignment:
Q  14 catacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtct 113  Q
    ||||||||  || ||| |||||||||||||||||||  ||||||||||||||| |||| ||||| | | |||| |||| ||| | ||||||||||| |||    
T  24407548 catacatatgagcgggttcgaccaccaattatgaattccaaaactaaaaacagaattactagctctcatccactacaaggaataagattttactttatct 24407647  T
Q  114 aa 115  Q
    ||    
T  24407648 aa 24407649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 27117703 - 27117606
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtcta 114  Q
    |||||||||  ||||||||||||| |  ||| |  |||||||||| ||| ||||| |||| ||||||||||||||||||| |||||| ||||| ||||    
T  27117703 acataaaagcaggctcgaccaccactgttgagtgccaaaactaaatacaacattactagcctttaaccaccacaaagaagttgatttcactttatcta 27117606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 42513318 - 42513415
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtcta 114  Q
    ||||||||| |||||||||||||| | |||| |  |||||||||| ||| ||||| |||| |||||||||||||| |||| | |||| ||||| ||||    
T  42513318 acataaaagagggctcgaccaccactgatgagtgccaaaactaaatacaacattactagcctttaaccaccacaacgaagttaatttcactttatcta 42513415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 126
Target Start/End: Complemental strand, 17106807 - 17106695
Alignment:
Q  14 catacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtct 113  Q
    ||||||||| || ||| ||||||||||| |||||||||| || ||||| ||| ||||| || |||| |||||||||||  || | ||||| ||||| |||    
T  17106807 catacataagagcgggttcgaccaccaactatgaatatcgaagctaaacacaacattactatctttcaaccaccacaacaaataggatttaactttatct 17106708  T
Q  114 aatatttgtggta 126  Q
    || | ||||||||    
T  17106707 aacagttgtggta 17106695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 30732856 - 30732759
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtcta 114  Q
    |||||||||  ||||||||||||| | |||| |  |||||||||| ||| ||||| |||  |||||||||||||| |||| |||||| ||||| ||||    
T  30732856 acataaaagcaggctcgaccaccactgatgagtgccaaaactaaatacaacattactagtctttaaccaccacaacgaagttgatttcactttatcta 30732759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 27795217 - 27795269
Alignment:
Q  153 ctatcatttcgatcattccataggacccaaacacactgaagccaaatcaaatg 205  Q
    |||||||| || |||||||| |  |||||||||||||||||||||||||||||    
T  27795217 ctatcattccgttcattccaaacaacccaaacacactgaagccaaatcaaatg 27795269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 27 - 160
Target Start/End: Complemental strand, 47623597 - 47623464
Alignment:
Q  27 gggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaatatttgtggta 126  Q
    ||||||||||||||||||||| ||||| | ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  47623597 gggctcgaccaccaattatgagtatcatagctaaaaacaacattactagcttttaaccaccacaaagaagatgattttactttgtctaacatttgtggta 47623498  T
Q  127 aagcgttgtgcctgtttctaaaaattctatcatt 160  Q
    ||| | | ||||| |||||||||| |||||||||    
T  47623497 aagagctctgcctctttctaaaaactctatcatt 47623464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 7 - 160
Target Start/End: Original strand, 13351902 - 13352055
Alignment:
Q  7 caatgctcatacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttac 106  Q
    |||||| || |||| |||| |||||| |||||||||||||| || |||| ||||| ||| |||||  |||||||||||||||||||||| || |||| ||    
T  13351902 caatgcccaaacatgaaagcgggctcaaccaccaattatgagtaccaaagctaaatacaacattacgagcttttaaccaccacaaagaaaattatttaac 13352001  T
Q  107 tttgtctaatatttgtggtaaagcgttgtgcctgtttctaaaaattctatcatt 160  Q
    ||||||||  |||||||| |||| | | || || ||||||||||| ||||||||    
T  13352002 tttgtctagcatttgtggcaaagagctttgtctatttctaaaaatcctatcatt 13352055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 260
Target Start/End: Original strand, 6259415 - 6259659
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaat 116  Q
    ||||||||| |||||||||||||| |  ||| || |||||||||| ||| ||||  |||| |||| |||||||||||||| |||||| ||||| ||||      
T  6259415 acataaaagcgggctcgaccaccagtgttgagtaccaaaactaaatacaacattgctagcctttagccaccacaaagaagttgatttcactttatctagc 6259514  T
Q  117 atttgtggtaaagcgttgtgcctgtttctaaaaattctatcatttcgatcattccataggacccaaacacactgaagccaaatcaaatggaaaaaagatc 216  Q
    |||||||| ||||   | || || ||||||||||| |||||||| |  |||||||| |  ||| |||||||  | | ||||||||||||||||||||| |    
T  6259515 atttgtggcaaagtactttgtctatttctaaaaatcctatcattcctttcattccacaacaccgaaacacaaagcaaccaaatcaaatggaaaaaagacc 6259614  T
Q  217 ttcacaatttc-aaaaacctgcgtaatgaataaattgcaaaaaat 260  Q
     || |  | || || ||||| |||||| |||||||||||||||||    
T  6259615 gtctccctctcgaacaacctacgtaattaataaattgcaaaaaat 6259659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 31 - 115
Target Start/End: Original strand, 6478131 - 6478215
Alignment:
Q  31 tcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaa 115  Q
    ||||||||||||||||| ||||||||||||||||| ||||| ||||||||| ||||||||| ||| ||||||||||||| |||||    
T  6478131 tcgaccaccaattatgagtatcaaaactaaaaacaacattattagcttttagccaccacaaggaatatgattttactttatctaa 6478215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 260
Target Start/End: Original strand, 26059489 - 26059733
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaat 116  Q
    ||||||||| |||||||||||||| | |||| || |||||||||| ||| ||||  |||| ||||||||||||||||||| |||||| ||||| ||||      
T  26059489 acataaaagcgggctcgaccaccactgatgagtaccaaaactaaatacaacattgctagcctttaaccaccacaaagaagttgatttcactttatctagc 26059588  T
Q  117 atttgtggtaaagcgttgtgcctgtttctaaaaattctatcatttcgatcattccataggacccaaacacactgaagccaaatcaaatggaaaaaagatc 216  Q
    |||||||| ||||     || || ||||||||||| |||||||| |  |||||||| |  ||| |||||||  | | ||||||||| ||||| ||||| |    
T  26059589 atttgtggcaaagtacattgtctatttctaaaaatcctatcattcctttcattccacaacaccgaaacacaaagcaaccaaatcaagtggaagaaagacc 26059688  T
Q  217 ttcacaatttc-aaaaacctgcgtaatgaataaattgcaaaaaat 260  Q
     ||||  | || || ||||||| |||| |||||||||||||||||    
T  26059689 gtcaccctctcgaacaacctgcataattaataaattgcaaaaaat 26059733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 4841997 - 4842102
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaat 116  Q
    ||||||||| |||||||||||||| | ||||||| |||||||||| |||| |||  |||| ||||||||||||||||||| |||||| ||||| |||||     
T  4841997 acataaaagcgggctcgaccaccactgatgaataccaaaactaaatacaggattgctagcctttaaccaccacaaagaagttgatttcactttatctaac 4842096  T
Q  117 atttgt 122  Q
    ||||||    
T  4842097 atttgt 4842102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 111 - 203
Target Start/End: Original strand, 19161189 - 19161281
Alignment:
Q  111 tctaatatttgtggtaaagcgttgtgcctgtttctaaaaattctatcatttcgatcattccataggacccaaacacactgaagccaaatcaaa 203  Q
    ||||| ||||||||||||| | | ||| | |||||||||||||||||||||||||||||||||  |||| ||| |||||||||||||||||||    
T  19161189 tctaacatttgtggtaaagagctctgcatatttctaaaaattctatcatttcgatcattccattagaccgaaatacactgaagccaaatcaaa 19161281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 12813746 - 12813639
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaat 116  Q
    ||||||||| |||||||||||||| | |||||||  ||||||||| ||| ||||  |||| ||||||||||||||||||| |||||| ||||| |||||     
T  12813746 acataaaagcgggctcgaccaccactgatgaatactaaaactaaatacaacattgctagcctttaaccaccacaaagaagttgatttcactttatctaac 12813647  T
Q  117 atttgtgg 124  Q
    ||||||||    
T  12813646 atttgtgg 12813639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 24547597 - 24547522
Alignment:
Q  28 ggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattt 103  Q
    |||||||||||||||||||| || |||||||||| |||||||||  ||||||||||||| ||||||||| ||||||    
T  24547597 ggctcgaccaccaattatgagtaccaaaactaaatacagcattacaagcttttaaccactacaaagaagttgattt 24547522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 11909647 - 11909550
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtcta 114  Q
    ||||||||| |||||||||||||| | |||| |  |||||||||| ||| ||||| |||| |||||||||||||| |||| |||||| ||||| ||||    
T  11909647 acataaaagcgggctcgaccaccactgatgagtgccaaaactaaatacaacattactagcctttaaccaccacaacgaagttgatttcactttatcta 11909550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 37298046 - 37297949
Alignment:
Q  12 ctcatacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttacttt 109  Q
    |||||||||||||| ||||||||||||||||||||  || ||||| |||| ||  ||||| ||||||| ||||||||||| | |  ||||||||||||    
T  37298046 ctcatacataaaagcgggctcgaccaccaattatgtgtaccaaaattaaagactacattactagctttcaaccaccacaaggtatgtgattttacttt 37297949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 17400702 - 17400784
Alignment:
Q  9 atgctcatacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaa 91  Q
    |||| |||||||||||| ||||||||||| ||||||||  |||||||| |||| ||  ||||| ||||||| |||||||||||    
T  17400702 atgcacatacataaaagcgggctcgaccaacaattatgtgtatcaaaattaaagaccacattactagctttcaaccaccacaa 17400784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 6050200 - 6050297
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtcta 114  Q
    ||||||||| |||||||||||||| | |||| |  |||||||||| ||| ||||| |||| |||||||||||||| |||| | |||| ||||| ||||    
T  6050200 acataaaagagggctcgaccaccactgatgagtgccaaaactaaatacaacattactagcctttaaccaccacaacgaagttaatttcactttatcta 6050297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 51052078 - 51052175
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtcta 114  Q
    ||||||||| |||||||||||||| | |||| |  |||||||||| ||| ||||| |||  |||||||||||||| |||| |||||| ||||| ||||    
T  51052078 acataaaagcgggctcgaccaccactgatgagtgccaaaactaaatacaacattactagtctttaaccaccacaacgaagttgatttcactttatcta 51052175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 4646552 - 4646502
Alignment:
Q  65 agcattaatagcttttaaccaccacaaagaagatgattttactttgtctaa 115  Q
    ||||||| ||||||| ||||||||||||||| ||||||||||||| |||||    
T  4646552 agcattactagctttcaaccaccacaaagaatatgattttactttatctaa 4646502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 254
Target Start/End: Original strand, 35540647 - 35540885
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaat 116  Q
    ||||||||| |||||||||||||| | |||  |  |||||||||| ||| ||||| |||| |||||||||||||| |||| | |||| ||||| |||| |    
T  35540647 acataaaagagggctcgaccaccactgatgtgtgccaaaactaaatacaacattactagcctttaaccaccacaacgaagttaatttcactttatctagt 35540746  T
Q  117 atttgtggtaaagcgttgtgcctgtttctaaaaattctatcatttcgatcattccataggacccaaacacactgaagccaaatcaaatggaaaaaagatc 216  Q
    | ||| || | ||   | || || ||||||||||  |||||||| |  |||||||| || ||| |||||||  | | ||||||||| ||||| ||||| |    
T  35540747 aattgaggcacagtactttgtctatttctaaaaagcctatcattcctttcattccacagcaccgaaacacaaagcaaccaaatcaagtggaagaaagacc 35540846  T
Q  217 ttcacaatttc-aaaaacctgcgtaatgaataaattgca 254  Q
     || |  | || || ||||||| ||||||||||||||||    
T  35540847 gtcgccctctcgaacaacctgcataatgaataaattgca 35540885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 216
Target Start/End: Original strand, 2490824 - 2491009
Alignment:
Q  31 tcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaatatttgtggtaaagc 130  Q
    ||||||||||||| |||||| |||||| ||||||  ||||| || |||| | ||||||||  ||| | ||||||||||| ||||| |  ||||||||||     
T  2490824 tcgaccaccaattgtgaataccaaaacgaaaaactacattactaactttcagccaccacagggaataagattttactttatctaacaaatgtggtaaaga 2490923  T
Q  131 gttgtgcctgtttctaaaaattctatcatttcgatcattccataggacccaaacacactgaagccaaatcaaatggaaaaaagatc 216  Q
      | ||  | || || ||||  |||||||| || |||||||| |  | |||||||||| | |||||||| | ||||||||||||||    
T  2490924 actatgattattactgaaaacgctatcattccgctcattccacaatatccaaacacacagcagccaaattagatggaaaaaagatc 2491009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 51994131 - 51994079
Alignment:
Q  156 tcatttcgatcattccataggacccaaacacactgaagccaaatcaaatggaa 208  Q
    ||||| || ||||||||||  |||||||||||||||||||||||||| |||||    
T  51994131 tcattccgttcattccatataacccaaacacactgaagccaaatcaagtggaa 51994079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 25560713 - 25560750
Alignment:
Q  9 atgctcatacataaaagtgggctcgaccaccaattatg 46  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  25560713 atgctcatatataaaagcgggctcgaccaccaattatg 25560750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 51994276 - 51994224
Alignment:
Q  9 atgctcatacataaaagtgggctcgaccaccaattatgaatatcaaaactaaa 61  Q
    |||| |||||||| ||| ||||||||||||||||||||| || ||||| ||||    
T  51994276 atgcccatacatacaagcgggctcgaccaccaattatgagtaccaaaagtaaa 51994224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 17 - 261
Target Start/End: Original strand, 47876581 - 47876826
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaat 116  Q
    |||||||||| ||||||||||||| | |||| || |||||||||| ||| ||||| |||| ||||||||||||||||||| |||||| ||||| ||||      
T  47876581 acataaaagtaggctcgaccaccactgatgagtaccaaaactaaatacaacattactagcctttaaccaccacaaagaagttgatttcactttttctagc 47876680  T
Q  117 atttgtggtaaagcgttgtgcctgtttctaaaaattctatcatttcgatcattccataggacccaaacacactgaagccaaatcaaatggaaaaaagatc 216  Q
    |||||||| ||||   | || || ||||||||||| |||||||| |  |||||||| |  ||| |||||||  | | ||||||||| ||||| ||||| |    
T  47876681 atttgtggcaaagaactttgtctatttctaaaaatcctatcattcctttcattccacaacaccgaaacacaaagcaaccaaatcaagtggaagaaagacc 47876780  T
Q  217 ttcacaatttc-aaaaacctgcgtaatgaataaattgcaaaaaata 261  Q
     || |  | || || ||||||| |||| ||||||||||||||||||    
T  47876781 atcgccctctcgaacaacctgcataattaataaattgcaaaaaata 47876826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 30 - 260
Target Start/End: Complemental strand, 235968 - 235737
Alignment:
Q  30 ctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaatatttgtggtaaag 129  Q
    ||||||||||| |  ||| || |||||||||| ||| |||||  ||| ||||||||||||||||||| |||||| ||||| ||||  |||||||| ||||    
T  235968 ctcgaccaccactgttgagtaccaaaactaaatacaacattacaagcctttaaccaccacaaagaagttgatttcactttatctagcatttgtggcaaag 235869  T
Q  130 cgttgtgcctgtttctaaaaattctatcatttcgatcattccataggacccaaacacactgaagccaaatcaaatggaaaaaagatcttcacaatttc-a 228  Q
     | | || || |||||||||||  |||||||||| |||||||| |  ||| |||||||  | | ||||||||| ||||| ||||| | || |  | || |    
T  235868 agctttgtctatttctaaaaatcatatcatttcgttcattccacaacaccgaaacacaaagcaaccaaatcaagtggaagaaagaacgtcgccctctcga 235769  T
Q  229 aaaacctgcgtaatgaataaattgcaaaaaat 260  Q
    | ||||||| |||| |||||||||||||||||    
T  235768 acaacctgcataattaataaattgcaaaaaat 235737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 29967573 - 29967743
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaat 116  Q
    ||||||||| |||||||||||||| | |||| || |||||||||||||| ||||| |||| ||||||||||||||||| | |||||| || || ||||      
T  29967573 acataaaagcgggctcgaccaccactgatgagtaccaaaactaaaaacaacattactagcctttaaccaccacaaagaggttgatttcacattatctagc 29967672  T
Q  117 atttgtggtaaagcgttgtgcctgtttctaaaaattctatcatttcgatcattccataggacccaaacaca 187  Q
    |||||||| |  |   | || || ||||||||||| |||||||| || |||||||| || ||||| |||||    
T  29967673 atttgtggcagcgtactttgtctatttctaaaaatcctatcattccgttcattccacagcacccagacaca 29967743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 260
Target Start/End: Complemental strand, 11277795 - 11277550
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaag-atgattttactttgtctaa 115  Q
    |||||||||||||||||||||||| | |||| || |||||||||| ||| ||||  |||| |||||||||||||||||||  |||||| ||||| ||||     
T  11277795 acataaaagtgggctcgaccaccactgatgagtaccaaaactaaatacaacattgctagcctttaaccaccacaaagaagtttgatttcactttatctag 11277696  T
Q  116 tatttgtggtaaagcgttgtgcctgtttctaaaaattctatcatttcgatcattccataggacccaaacacactgaagccaaatcaaatggaaaaaagat 215  Q
    ||||||||| |||    | || || ||||||||||| |||||||| |  |||||||| |  ||| |||||||  | | |||||| || ||||| |||||     
T  11277695 tatttgtggcaaaatactttgtctatttctaaaaatcctatcattcctttcattccacaacaccaaaacacaaagcaaccaaattaagtggaagaaagac 11277596  T
Q  216 cttcacaatttc-aaaaacctgcgtaatgaataaattgcaaaaaat 260  Q
    |  | |  | || || |||||||||||| |||||||||||||||||    
T  11277595 cgacgccctctcgaacaacctgcgtaattaataaattgcaaaaaat 11277550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 37919142 - 37919249
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaat 116  Q
    ||||||||| ||| |||||||||| | |||| || |||||||||| ||| ||||  |||| ||||||||||||||||||| |||||| ||||| |||||     
T  37919142 acataaaagcgggttcgaccaccactgatgagtaccaaaactaaatacaacattgctagcctttaaccaccacaaagaagttgatttcactttatctaac 37919241  T
Q  117 atttgtgg 124  Q
    ||||||||    
T  37919242 atttgtgg 37919249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 17720247 - 17720354
Alignment:
Q  22 aaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaatatttg 121  Q
    |||| |||||||||||||| |  ||| || |||||||||||||| |||||  ||| ||||||||||||||||||| |||||| ||||| ||||  |||||    
T  17720247 aaagcgggctcgaccaccactggtgagtaccaaaactaaaaacaacattacaagcctttaaccaccacaaagaagttgatttcactttatctagcatttg 17720346  T
Q  122 tggtaaag 129  Q
    ||| ||||    
T  17720347 tggcaaag 17720354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 37254353 - 37254555
Alignment:
Q  14 catacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtct 113  Q
    |||||||||| | ||||||||||||||||||||  || ||||| |||| ||  ||||| ||||||| ||||||||||| | |  |||||||||||| |||    
T  37254353 catacataaatgcgggctcgaccaccaattatgtgtaccaaaattaaagactacattactagctttcaaccaccacaaggtatgtgattttactttatct 37254452  T
Q  114 aatatttgtggtaaagcgttgtgcctgtttctaaaaattctatcatttcgatcattccataggacccaaacacactgaagccaaatcaaatggaaaaaag 213  Q
    || | |||||||| ||   | || | ||| | ||| |  ||  |||| |  ||||||||||  ||||||||||||||||||||||| ||||| || ||||    
T  37254453 aacaattgtggtatagaactttgacagttccgaaataacctgccattccattcattccataaaacccaaacacactgaagccaaataaaatgaaataaag 37254552  T
Q  214 atc 216  Q
    |||    
T  37254553 atc 37254555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 34359488 - 34359427
Alignment:
Q  68 attaatagcttttaaccaccacaaagaagatgattttactttgtctaatatttgtggtaaag 129  Q
    |||| ||||||||||||||||| |||||||||| |||||||||||||| || ||||||||||    
T  34359488 attattagcttttaaccaccaccaagaagatgaatttactttgtctaacatatgtggtaaag 34359427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 48394499 - 48394600
Alignment:
Q  14 catacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtct 113  Q
    ||||||||| || ||| ||||||||||||||||| || | ||| |||| ||| ||||| ||||||| ||||||||||| ||| ||||||||| ||| |||    
T  48394499 catacataatagcgggttcgaccaccaattatgagtaccgaaattaaagacaacattactagctttcaaccaccacaaggaatatgattttattttatct 48394598  T
Q  114 aa 115  Q
    ||    
T  48394599 aa 48394600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 4938670 - 4938591
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaag 96  Q
    |||||||||||||||||||||||| | |||| |  |||||||||| ||| ||||| |||| |||| ||||||||| ||||    
T  4938670 acataaaagtgggctcgaccaccactgatgagtgccaaaactaaatacaacattactagcctttagccaccacaacgaag 4938591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 38890262 - 38890165
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtcta 114  Q
    ||||||||| |||||| ||||||| | |||| |  ||||| |||| ||| ||||| || | ||||||||||||||||||| |||||| ||||| ||||    
T  38890262 acataaaagcgggctcaaccaccactgatgagtgccaaaattaaatacaacattactaacctttaaccaccacaaagaagttgatttcactttatcta 38890165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 25619217 - 25619256
Alignment:
Q  177 acccaaacacactgaagccaaatcaaatggaaaaaagatc 216  Q
    ||||||||||||||||||||||||||||| || |||||||    
T  25619217 acccaaacacactgaagccaaatcaaatgaaataaagatc 25619256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 31177847 - 31177768
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaag 96  Q
    |||||||||||||||||||||||| | |||| |  |||||||||| ||| ||||| || | |||| ||||||||| ||||    
T  31177847 acataaaagtgggctcgaccaccactgatgagtgccaaaactaaatacaacattactaacctttagccaccacaacgaag 31177768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 41698689 - 41698608
Alignment:
Q  9 atgctcatacataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccaca 90  Q
    |||| |||||||| ||| ||||||||||||||||||||| || ||||  |||| ||  ||||| ||||||| | ||||||||    
T  41698689 atgcccatacatacaagcgggctcgaccaccaattatgagtaccaaatgtaaagaccacattactagctttcagccaccaca 41698608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 5954 - 5847
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaat 116  Q
    ||||||||| ||||| |||||||| | |||| || |||||||||| ||||||||  |||| ||||||||||||||||||| |||||| ||||| ||||      
T  5954 acataaaagcgggcttgaccaccagtgatgagtaccaaaactaaatacagcattgctagcctttaaccaccacaaagaagttgatttcactttatctagc 5855  T
Q  117 atttgtgg 124  Q
    ||||||||    
T  5854 atttgtgg 5847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 11747 - 11650
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtcta 114  Q
    ||||||||| |||||||||||||| | |||| |  |||||||||| ||| ||||| |||| ||||||||||||||||||| |||||| ||||| ||||    
T  11747 acataaaagcgggctcgaccaccactgatgagtgacaaaactaaatacaacattactagcctttaaccaccacaaagaagttgatttcactttatcta 11650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 33 - 129
Target Start/End: Complemental strand, 6535 - 6439
Alignment:
Q  33 gaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtctaatatttgtggtaaag 129  Q
    ||||||||||| ||| || |||||||||| ||| ||||| ||||||| ||||||||||| ||| | ||||||||||| ||||| || || |||||||    
T  6535 gaccaccaattttgagtaccaaaactaaatacaacattactagctttcaaccaccacaatgaataagattttactttatctaacatatgcggtaaag 6439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 106385 - 106288
Alignment:
Q  17 acataaaagtgggctcgaccaccaattatgaatatcaaaactaaaaacagcattaatagcttttaaccaccacaaagaagatgattttactttgtcta 114  Q
    ||||||||| |||||||||||||| | |||| |  |||||||||| ||| ||||| |||| |||||||||||||| |||| | |||| ||||| ||||    
T  106385 acataaaagagggctcgaccaccactgatgagtgccaaaactaaatacaacattactagcctttaaccaccacaacgaagttaatttcactttatcta 106288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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