View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20914_low_11 (Length: 429)
Name: NF20914_low_11
Description: NF20914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20914_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 7 - 415
Target Start/End: Complemental strand, 43561754 - 43561340
Alignment:
| Q |
7 |
cttccaagaccaacaacgttgtctccacgtgacattcaagttgcagctgcagaagctgctgccatggtggaatttgattctcaaatattgcgctcaacaa |
106 |
Q |
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| T |
43561754 |
cttccaagaccaacaacgttgtctccacgtgacattcaagttgcagctgcagaagctgctgccatggtggaatttgattctcaaatattgcgctcaacaa |
43561655 |
T |
|
| Q |
107 |
tctcactcagctctgaagtctctgactcaccttcatattcatcagagtcttcagagcttagtgagattgttgagcttcctaatatagaagagagttataa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43561654 |
tctcactcagctctgaagtctctgactcaccttcatattcatcagagtctacagagcttagtgagattgttgagcttcctaatatagaagagagttataa |
43561555 |
T |
|
| Q |
207 |
ctcggttgaggtgagaagtgagtttatgttgattgactcggttgaaagttggttgtatccgtcagtagaaagtttatgtgacatgatggttgaagaacag |
306 |
Q |
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| T |
43561554 |
ctcggttgaggtgagaagtgagtttatgttgattgactcggttgaaagttggttgtatccgtcagtagaaagtttatgtgacatgatggttgaagaacag |
43561455 |
T |
|
| Q |
307 |
agttttttgttataataaaaagaacatagtttagttgtgatattcagcaatgccatatttggttt--ggttttgtgaagtttagattatt----gtttgc |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
43561454 |
agttttttgttataataaaaagaacatagtttagttgtgatattcagcaatgccatatttggtttagggttttgtgaagtttagattattgttggtttgc |
43561355 |
T |
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| Q |
401 |
ctcactttcatcagt |
415 |
Q |
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||||||||||||||| |
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| T |
43561354 |
ctcactttcatcagt |
43561340 |
T |
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