View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20914_low_13 (Length: 370)
Name: NF20914_low_13
Description: NF20914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20914_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 348
Target Start/End: Complemental strand, 21116657 - 21116327
Alignment:
| Q |
18 |
acaaccagctgcatatacaagaacaaattnnnnnnnttcacattcacgcacaaagcgctatatacatggtatcgacattttatgtgattcataccttatc |
117 |
Q |
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| T |
21116657 |
acaatcagctgcatatacaagaacaaattaaaaaaattcacattcacgcacaaagcgctatatacatggtatcaacattttatgtgattcataccttatc |
21116558 |
T |
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| Q |
118 |
taatgatgtcacaaaaaccttgaatttctcatgcgaatccagacttacagaatctgcagtaattaagtacaaagaaaacagcgtgtaagcatatttgcat |
217 |
Q |
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| T |
21116557 |
taatgatgtcacaaaaaccttgaatttctcatgcgaatccggacttacagaatctgcagtaattaagaacaaagaaaacatagtgtaagcatatttgcat |
21116458 |
T |
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| Q |
218 |
gaattgtacacaataaaacttgaaaaataaaattaagatgaatactcctaagaccatgtgtttttgtgcagctctttgaacttccttctccaaaattgcc |
317 |
Q |
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| T |
21116457 |
gaattgtacacaataaaacttgaaaaataaaattaagatgaatactcctaagaccatgtgtttttgtgcagctctttgaacttccttctccaaaattgcc |
21116358 |
T |
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| Q |
318 |
cacatattccatatcttctacccgcgttgtc |
348 |
Q |
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| T |
21116357 |
cacatattccatatcttctacgcgcgttgtc |
21116327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 74 - 338
Target Start/End: Original strand, 12928950 - 12929219
Alignment:
| Q |
74 |
gctatatacatggtatcgacattttatgtgattcataccttatctaatgatgtcacaaaaaccttgaatttctcatgcgaatccagacttacagaatctg |
173 |
Q |
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| T |
12928950 |
gctatatacatggtaacaatattttacgtgattcataccttgtctaatgatgttacagaaaccttgaatttgtcatgtgaatttggacttacagaacctg |
12929049 |
T |
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| Q |
174 |
cagtaattaagtacaaagaaaacagcgtgtaagcatatttgcatgaat----tgtacacaataaaacttgaaaaataaaattaagatgaatactcctaag |
269 |
Q |
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| T |
12929050 |
cagtaattaagaacaaagaaaacatagtttaaggatatttgcatgaatattgtgtacacaataaaacttcaaaaataaaattaagatgaatactcctaag |
12929149 |
T |
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| Q |
270 |
accatgtg-tttttgtgcagctctttgaacttccttctccaaaattgcccacatattccatatcttctac |
338 |
Q |
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| T |
12929150 |
accatatgttttttgggcagctgtttgaaattccttctccgaaattgcccacatattccatatcttctac |
12929219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 74 - 352
Target Start/End: Complemental strand, 12911958 - 12911680
Alignment:
| Q |
74 |
gctatatacatggtatcgacattttatgtgattcataccttatctaatgatgtcacaaaaaccttgaatttctcatgcgaatccagacttacagaatctg |
173 |
Q |
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||||||||||||||| | ||||||| || ||||||||||| ||| ||||||| | |||||||||||| ||||||| ||| ||||||||||||||||| |
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| T |
12911958 |
gctatatacatggtaacagcattttacgtaattcataccttgtctgatgatgttataaaaaccttgaacatctcatgtaaattcagacttacagaatctg |
12911859 |
T |
|
| Q |
174 |
cagtaattaagtacaaagaaaacagcgtgtaagcatatttgcatgaattgtacacaataaaacttgaaaaataaaattaagatgaatactcctaagacca |
273 |
Q |
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| T |
12911858 |
cagtaattaacaacaaagaaaacatagtttaaggagatttgcatgaattgtacacaaaaaaacacgaaagcaaaaattaagatgaatacccctaaaacca |
12911759 |
T |
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| Q |
274 |
tgtgtttttgtgcagctctttgaacttccttctccaaaattgcccacatattccatatcttctacccgcgttgtctctg |
352 |
Q |
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| T |
12911758 |
tatgtttttgtgcagctctttgaaattccatctccaaaattgcccgcatattccatatcttttactggtgttgtctctg |
12911680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 208 - 336
Target Start/End: Original strand, 12902242 - 12902375
Alignment:
| Q |
208 |
atatttgcatgaattgtacacaataaaa-cttgaaaaataaaattaagatgaatactcctaagaccatgtgtttttgtgcagctctttgaacttccttct |
306 |
Q |
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|||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||| | ||| ||||||||||| |||||| |||||| || |||| |
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| T |
12902242 |
atattttcatgaattgtacacgataaaagcttgaaaaataaaattaagatgaatactcttgagatcatgtgtttttaggcagctgtttgaaatttgttct |
12902341 |
T |
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| Q |
307 |
ccaaaattgccca----catattccatatcttct |
336 |
Q |
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| T |
12902342 |
aaaaaattgcccacatgcatattccatatcttct |
12902375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 350
Target Start/End: Complemental strand, 12928313 - 12928213
Alignment:
| Q |
250 |
ttaagatgaatactcctaagaccatgtgtttttgtgcagctctttgaacttccttctccaaaattgcccacatattccatatcttctacccgcgttgtct |
349 |
Q |
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||||||| ||||||| ||||||| ||| | |||| ||||||| || | ||||||||||||||| | | ||||||||| |||||||||| |||||||| |
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| T |
12928313 |
ttaagatcaatactcttaagaccttgtttgtttgggcagctcctttatattccttctccaaaatcgtctgcatattccacatcttctaccgccgttgtct |
12928214 |
T |
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| Q |
350 |
c |
350 |
Q |
| |
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| T |
12928213 |
c |
12928213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 92 - 143
Target Start/End: Original strand, 12902190 - 12902241
Alignment:
| Q |
92 |
acattttatgtgattcataccttatctaatgatgtcacaaaaaccttgaatt |
143 |
Q |
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| T |
12902190 |
acattttaagtaattaataccttgtctaatgatgttacaaaaaccttgaatt |
12902241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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