View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20914_low_16 (Length: 341)
Name: NF20914_low_16
Description: NF20914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20914_low_16 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 13)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 9161103 - 9161426
Alignment:
| Q |
1 |
cataaaaccaaatctaatcactaattttctaaaatcaataaaacaacaaaagaagtatacatattttgacatatcacaatcatcttccatcatctaaggc |
100 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9161103 |
cataaaaccaaatctaatcactaatcttctaaaatcaataaaacaacaaaagaagtatacatattttgacatatcacaatcatcttccatcatctaaggc |
9161202 |
T |
|
| Q |
101 |
aatcaatggttgatctttcaagctatcatacccactatatccaaggttaatgctttcaccaatttcattataaatactagaagatgcctctttaagtaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9161203 |
aatcaatggttgatctttcaagctatcatacccactatatccaaggttaatgctttcaccaatttcattataaatactagaagatgcctctttaagtaag |
9161302 |
T |
|
| Q |
201 |
tgttgtctctcctcaaaatttagctctgaatcattccaaggatgcttctccattaaccttataccatccaactccattgccacttccttcatgctaggcc |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9161303 |
tgttgtctctcctcaaaatttagctctgaatcattccaaggatggttctccattaaccttataccatccaactccattgccacttccttcatgctaggcc |
9161402 |
T |
|
| Q |
301 |
tttcatcccctcttagtctcaaac |
324 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
9161403 |
tttcatcccctcttagtctcaaac |
9161426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 53 - 324
Target Start/End: Original strand, 9169981 - 9170252
Alignment:
| Q |
53 |
aagtatacatattttgacatatcacaatcatcttccatcatctaaggcaatcaatggttgatctttcaagctatcatacccactatatccaaggttaatg |
152 |
Q |
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|
||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||| |||||||||||||| | |
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| T |
9169981 |
aagtatatatattttgacatatcacaatcatcttccatcatccaaggcaatcaatgattgatctttcaagctatcatatccattatatccaaggttatag |
9170080 |
T |
|
| Q |
153 |
ctttcaccaatttcattataaatactagaagatgcctctttaagtaagtgttgtctctcctcaaaatttagctctgaatcattccaaggatgcttctcca |
252 |
Q |
| |
|
|| |||||| ||||||||||||||||| |||||||||| | ||||||| |||| ||||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
9170081 |
ctatcaccagtttcattataaatactacaagatgcctcatgaagtaagcgttgactctcctcaaaattttgctctgtatcattccaaggatgcttctcca |
9170180 |
T |
|
| Q |
253 |
ttaaccttataccatccaactccattgccacttccttcatgctaggcctttcatcccctcttagtctcaaac |
324 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| | ||| |||||||||||||| ||||| |||| |
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| T |
9170181 |
ttaaccttatgccatccaactccattgccacttccttcatacaaggtctttcatcccctctaagtcttaaac |
9170252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 53 - 304
Target Start/End: Original strand, 9155243 - 9155494
Alignment:
| Q |
53 |
aagtatacatattttgacatatcacaatcatcttccatcatctaaggcaatcaatggttgatctttcaagctatcatacccactatatccaaggttaatg |
152 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||| ||| |||||||| ||||||||||||||| |||||||||||||||||||||| |||| |
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|
| T |
9155243 |
aagtatacatattttgagatatcagaatcatcttccatcatccaagataatcaatgattgatctttcaagctgtcatacccactatatccaaggtcaatg |
9155342 |
T |
|
| Q |
153 |
ctttcaccaatttcattataaatactagaagatgcctctttaagtaagtgttgtctctcctcaaaatttagctctgaatcattccaaggatgcttctcca |
252 |
Q |
| |
|
|| |||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||| |||| ||||||||||||||| ||||||| |
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| T |
9155343 |
ctatcaccaatttcactataaatactagaagttgcctttttaagtaagtgttgtctctcctcaaattttaggtctgtatcattccaaggatgtttctcca |
9155442 |
T |
|
| Q |
253 |
ttaaccttataccatccaactccattgccacttccttcatgctaggcctttc |
304 |
Q |
| |
|
||||||||||||||||||||||||| || | ||||||||| ||||| ||||| |
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|
| T |
9155443 |
ttaaccttataccatccaactccatagctatttccttcatactaggtctttc |
9155494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 71 - 324
Target Start/End: Original strand, 9218082 - 9218335
Alignment:
| Q |
71 |
atatcacaatcatcttccatcatctaaggcaatcaatggttgatctttcaagctatcatacccactatatccaaggttaatgctttcaccaatttcatta |
170 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||| |||||||| ||||| ||| ||| || ||||||| |
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|
| T |
9218082 |
atatcacaatcatcttccatcatccaagacaatcaatggctgatctttcaagctatcatacccattatatccagggttatagctatcatcagtttcattg |
9218181 |
T |
|
| Q |
171 |
taaatactagaagatgcctctttaagtaagtgttgtctctcctcaaaatttagctctgaatcattccaaggatgcttctccattaaccttataccatcca |
270 |
Q |
| |
|
|| |||||| |||||||||| | ||||||| |||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
9218182 |
tagatactacaagatgcctcatgaagtaagcgttgactctcctcaaaattttgctctgtatcattccaaggatgcttctccattaaccttatgccatcca |
9218281 |
T |
|
| Q |
271 |
actccattgccacttccttcatgctaggcctttcatcccctcttagtctcaaac |
324 |
Q |
| |
|
||||||| || |||||| |||| ||||| |||||||| ||||| ||||| |||| |
|
|
| T |
9218282 |
actccatagctacttccctcatactaggtctttcatcacctctaagtcttaaac |
9218335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 73 - 324
Target Start/End: Original strand, 9199568 - 9199819
Alignment:
| Q |
73 |
atcacaatcatcttccatcatctaaggcaatcaatggttgatctttcaagctatcatacccactatatccaaggttaatgctttcaccaatttcattata |
172 |
Q |
| |
|
||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||| ||||||| || |
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|
| T |
9199568 |
atcacaatcatcttccactatccaagacaatcaatggttgatctttcaagctatcatacccactatatccagggttgtagctatcaccagtttcattgta |
9199667 |
T |
|
| Q |
173 |
aatactagaagatgcctctttaagtaagtgttgtctctcctcaaaatttagctctgaatcattccaaggatgcttctccattaaccttataccatccaac |
272 |
Q |
| |
|
|||||| |||||||||| | |||||||||||| ||||| ||||| ||| | |||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9199668 |
gatactacaagatgcctcatgaagtaagtgttgactctcttcaaagttttgttctgtatcattccaaggatgcttctccattaaccttataccatccaac |
9199767 |
T |
|
| Q |
273 |
tccattgccacttccttcatgctaggcctttcatcccctcttagtctcaaac |
324 |
Q |
| |
|
||||| || |||||| |||| ||||| |||||||| ||||| ||||| |||| |
|
|
| T |
9199768 |
tccatagctacttccctcatactaggtctttcatcacctctaagtcttaaac |
9199819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 61 - 324
Target Start/End: Complemental strand, 9119290 - 9119026
Alignment:
| Q |
61 |
atattttgacatatcacaatcatcttccatcatctaaggcaatcaatggttgatctttcaagctatcata----cccactatatccaaggttaatgcttt |
156 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||| || |||||||||||||||||||||| ||||||||||||||||||| ||| | |
|
|
| T |
9119290 |
atattttgacatgtcacaatcatcttccatcatcctcggcaattaacggttgatctttcaagctatcatcataccccactatatccaaggttatagctat |
9119191 |
T |
|
| Q |
157 |
caccaatttcattataaatactagaagatgcctctttaagtaagtgttgtctctcctcaaaatttagctctgaatcattccaaggatgcttctccattaa |
256 |
Q |
| |
|
|| |||||| ||||| |||||||||||||| | ||||||| |||| || ||| ||||||||||||||| ||||||||| |||||| ||||| |||| |
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|
| T |
9119190 |
cag---tttcatcataaaagctagaagatgcctcatgaagtaagcgttggctttccccaaaatttagctctgtatcattccatggatgcatctcctttaa |
9119094 |
T |
|
| Q |
257 |
ccttataccatccaactccattgccacttccttcatgctaggcctttcatcccctcttagtctcaaac |
324 |
Q |
| |
|
||||||||||||||||||||| || | ||||||||| ||||| ||||| || |||| |||||||||| |
|
|
| T |
9119093 |
ccttataccatccaactccatagctatttccttcatactaggtctttcctctcctcgaagtctcaaac |
9119026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 48 - 167
Target Start/End: Original strand, 9146378 - 9146497
Alignment:
| Q |
48 |
aaaagaagtatacatattttgacatatcacaatcatcttccatcatctaaggcaatcaatggttgatctttcaagctatcatacccactatatccaaggt |
147 |
Q |
| |
|
|||| |||| ||||| |||||| |||||||| ||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||| ||||| |
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|
| T |
9146378 |
aaaacaagtgtacatgttttgaaatatcacagtcatcttccatcatccaaggcaatcgatggttgatcgttcaagctatcatacccactatatctaaggt |
9146477 |
T |
|
| Q |
148 |
taatgctttcaccaatttca |
167 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
9146478 |
caatgctatcaccaatttca |
9146497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 324
Target Start/End: Original strand, 1815523 - 1815604
Alignment:
| Q |
243 |
tgcttctccattaaccttataccatccaactccattgccacttccttcatgctaggcctttcatcccctcttagtctcaaac |
324 |
Q |
| |
|
||||| ||||||||||| || || ||||| ||||| ||||||||||||||||| || ||||| |||||| | |||||||||| |
|
|
| T |
1815523 |
tgcttatccattaacctcattccctccaattccatagccacttccttcatgcttggtctttcctcccctataagtctcaaac |
1815604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 324
Target Start/End: Complemental strand, 1843502 - 1843429
Alignment:
| Q |
251 |
cattaaccttataccatccaactccattgccacttccttcatgctaggcctttcatcccctcttagtctcaaac |
324 |
Q |
| |
|
||||||||| || || ||||| ||||| ||||||||||||||||| || ||||| |||||||| |||||||||| |
|
|
| T |
1843502 |
cattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaac |
1843429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 324
Target Start/End: Complemental strand, 1857513 - 1857440
Alignment:
| Q |
251 |
cattaaccttataccatccaactccattgccacttccttcatgctaggcctttcatcccctcttagtctcaaac |
324 |
Q |
| |
|
||||||||| || || ||||| ||||| ||||||||||||||||| || ||||| |||||||| |||||||||| |
|
|
| T |
1857513 |
cattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaac |
1857440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 324
Target Start/End: Complemental strand, 1869111 - 1869038
Alignment:
| Q |
251 |
cattaaccttataccatccaactccattgccacttccttcatgctaggcctttcatcccctcttagtctcaaac |
324 |
Q |
| |
|
||||||||| || || ||||| ||||| ||||||||||||||||| || ||||| |||||||| |||||||||| |
|
|
| T |
1869111 |
cattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaac |
1869038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 322
Target Start/End: Original strand, 9229131 - 9229218
Alignment:
| Q |
235 |
tccaaggatgcttctccattaaccttataccatccaactccattgccacttccttcatgctaggcctttcatcccctcttagtctcaa |
322 |
Q |
| |
|
||||||| ||||||||||||||||||| || || | |||||| |||||||| ||||||||||| ||||| || ||| | |||||||| |
|
|
| T |
9229131 |
tccaagggtgcttctccattaaccttaacccctctagctccatagccacttctttcatgctaggtctttcctcgcctttaagtctcaa |
9229218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 9146518 - 9146554
Alignment:
| Q |
169 |
tataaatactagaagatgcctctttaagtaagtgttg |
205 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9146518 |
tataaatactataagatgcctctttaagtaagtgttg |
9146554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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