View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20914_low_18 (Length: 331)
Name: NF20914_low_18
Description: NF20914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20914_low_18 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 16 - 331
Target Start/End: Complemental strand, 7535345 - 7535030
Alignment:
| Q |
16 |
atcgtgctggggtgtataacagaagggctagtggatcttatcgatataaacatgctagttcaaatagttcgtacaaaggcacactcgtagaagtactaga |
115 |
Q |
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| T |
7535345 |
atcgtgctgggttgtataaccgaagggctagtggatcttatcgatataaacatgctagttcaaatagttagtacaaaggcacactcgtagaagtactaga |
7535246 |
T |
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| Q |
116 |
tagtttttgcagggatggtaaagtgaatgaatcggttgacattttgcaagtgttggaaaagctttatattcatatggatttgcagcgttgtttgcaatta |
215 |
Q |
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| T |
7535245 |
tagtttttgcagggatggtaaagtgaatgaagcggttgacattttgcaagtgttggaaaagctttatattcatatggatttgcagcgttgtttgcaatta |
7535146 |
T |
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| Q |
216 |
atgcacgtttgtgggaagactaagtctcttgaagaggcaagagttgtacacagacatgctttgcaacatctgcatcctcttacggttagcaccgacaata |
315 |
Q |
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| T |
7535145 |
atgcacgtttgtgggaagactaagtctcttgaagaggcaagagttgtacacagacatgctttgcaacatttgcatcctcttacggttagcacagacaata |
7535046 |
T |
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| Q |
316 |
gagtattggagatgta |
331 |
Q |
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| T |
7535045 |
gagtattggagatgta |
7535030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 45 - 331
Target Start/End: Complemental strand, 7449775 - 7449492
Alignment:
| Q |
45 |
agtggatcttatcgatataaacatgctagttcaaatagttcgtacaaaggcacactcgtagaagtactagatagtttttgcagggatggtaaagtgaatg |
144 |
Q |
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| T |
7449775 |
agtggatcttatcgggataaacttgctagttcaggtagtttgtataacggcacacttgaggaa---ctagatagtttttgcagggatggtaaagtgaagg |
7449679 |
T |
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| Q |
145 |
aatcggttgacattttgcaagtgttggaaaagctttatattcatatggatttgcagcgttgtttgcaattaatgcacgtttgtgggaagactaagtctct |
244 |
Q |
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| T |
7449678 |
aagcagttgaaaatttgcaaaagttggaaaagcttcatattcatgtggatttgcagcgttgtttgcaattaatgcgcatttgtgggaaggctaagtctct |
7449579 |
T |
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| Q |
245 |
tgaagaggcaagagttgtacacagacatgctttgcaacatctgcatcctcttacggttagcaccgacaatagagtattggagatgta |
331 |
Q |
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| T |
7449578 |
tgaggaggcaagagttgtacacagacatgctttgcaacatttgcatcctcttacggttagcacagacaatagagtattggagatgta |
7449492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 114 - 284
Target Start/End: Complemental strand, 18664698 - 18664528
Alignment:
| Q |
114 |
gatagtttttgcagggatggtaaagtgaatgaatcggttgacattttgcaagtgttggaaaagctttatattcatatggatttgcagcgttgtttgcaat |
213 |
Q |
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| T |
18664698 |
gatagttcttgcatggagggtgaagtgaaggaagcaattgatgttttgcaagtgttagaaaagtttcatattcttgtagatttggatcgttgtttgcgat |
18664599 |
T |
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| Q |
214 |
taatgcacgtttgtgggaagactaagtctcttgaagaggcaagagttgtacacagacatgctttgcaacat |
284 |
Q |
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| T |
18664598 |
taatgcaacaatgtgggaagaccaagtctcttgaagaggcaaaagttgtacacagatatgttttacaacat |
18664528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 284
Target Start/End: Complemental strand, 18664955 - 18664828
Alignment:
| Q |
157 |
ttttgcaagtgttggaaaagctttatattcatatggatttgcagcgttgtttgcaattaatgcacgtttgtgggaagactaagtctcttgaagaggcaag |
256 |
Q |
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| T |
18664955 |
ttttgcaagagttagaaaagcttcatacttatgtggatttgtatctttgtttgcgattaatgcaactgtgtggaaaggctgagtttcttgaagaggcaaa |
18664856 |
T |
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| Q |
257 |
agttgtacacagacatgctttgcaacat |
284 |
Q |
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| T |
18664855 |
agttgtacacatatatgttttacaacat |
18664828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 114 - 284
Target Start/End: Original strand, 15079130 - 15079300
Alignment:
| Q |
114 |
gatagtttttgcagggatggtaaagtgaatgaatcggttgacattttgcaagtgttggaaaagctttatattcatatggatttgcagcgttgtttgcaat |
213 |
Q |
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||||||| ||||| ||| ||| ||||||| ||| | |||| ||||||||||||| |||||| || |||||||| | |||||| | ||||||||| || |
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| T |
15079130 |
gatagttcttgcatggagggtgaagtgaaggaagcaattgatgttttgcaagtgttagaaaagtttcatattcatgtagatttggatcgttgtttgagat |
15079229 |
T |
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| Q |
214 |
taatgcacgtttgtgggaagactaagtctcttgaagaggcaagagttgtacacagacatgctttgcaacat |
284 |
Q |
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| T |
15079230 |
taatgcaacaatgtgggaagaccaagtctcttgaagaggcaaaagttgtacacagatatgttttacaacat |
15079300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 157 - 284
Target Start/End: Original strand, 15078873 - 15079000
Alignment:
| Q |
157 |
ttttgcaagtgttggaaaagctttatattcatatggatttgcagcgttgtttgcaattaatgcacgtttgtgggaagactaagtctcttgaagaggcaag |
256 |
Q |
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| T |
15078873 |
ttttgcaagagttagaaaagcttcatacttatgtggatttgtatctttgtttgcgattaatgcaactgtgtggaaaggctgagtttcttgaagaggcaaa |
15078972 |
T |
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| Q |
257 |
agttgtacacagacatgctttgcaacat |
284 |
Q |
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| T |
15078973 |
agttgtacacagatatgttttacaacat |
15079000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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