View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20914_low_2 (Length: 608)
Name: NF20914_low_2
Description: NF20914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20914_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 18 - 598
Target Start/End: Complemental strand, 25633673 - 25633084
Alignment:
| Q |
18 |
ttattaaacacagtgagacacataaactaaaaacattaaagaattaataaacaaatatctaaatttcagaatcaattaattatatccagaatatattatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25633673 |
ttattaaacacagtgagacacataaactaaaaacattaaagaattaataaacaaatatctaaatttcagaatcaattaattatatccagaatatattatt |
25633574 |
T |
|
| Q |
118 |
agatgataaagataaagaagtcggtaacatta-ttgttaatcattacttgcagcctaagcaactagatctaagagtgcttagctacactatagcatatga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
25633573 |
agatgataaagataaagaagtcggtaacattagttgttaatcattacttgcagcctaagcaactagatctaagagtacttagctacactatagtatatga |
25633474 |
T |
|
| Q |
217 |
tagcttaattaatgtacacaaacatatgtctatatatacttgctgtaacagatac--ttcattaatgagaataatacttttccatacatttttctggttt |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
25633473 |
tagcttaattaatgtacacaaacatatgtctatatatacttgctgtaacagatacacttcatcaatgagaataatacttctccattcatttttctggttt |
25633374 |
T |
|
| Q |
315 |
cctaatattgttctaaccgttttctgttgtgcattcttccttgttcatcttcttggatcgatttcttcacgatcctttgtttctgattgcagattctgca |
414 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25633373 |
cctaatattgttctaaccgttttttgttgtgcattcttcgttgttcatcttcttggatcgatttcttcacgatcctttgtttctgattgcagattctgca |
25633274 |
T |
|
| Q |
415 |
ttcaatcatcgtttttct-tgt-----gttactctgtctttggttcgattgaattcaactttgatcgttcgttgattctttgtttcttcttgaaatttga |
508 |
Q |
| |
|
|||||||||||||||||| ||| | | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
25633273 |
ttcaatcatcgtttttctgtgtttcacgatcctctgtctttggttcgattgaattcaactttgatcgttcattgattctttgtttcttcttgaaatttga |
25633174 |
T |
|
| Q |
509 |
ttgaattcttcttcactttgtgattttcacatcgtattggtgtgaattttttgttgattgttcgggaacctttaattttgttcttctgtg |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
25633173 |
ttgaattcttcttcactttgtgattttcacatcgtattggtgtgaattttttgttgattgttcgggaatcttcaattttgttcttctgtg |
25633084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 159 - 264
Target Start/End: Complemental strand, 28669586 - 28669485
Alignment:
| Q |
159 |
attacttgcagcctaagcaactagatctaagagtgcttagctacactatagcatatgatagcttaattaatgtacacaaacata-tgtctatatatactt |
257 |
Q |
| |
|
||||||||||| |||||||||||| || ||||| |||||||||||||| || ||||||||||||| ||| |||| ||| ||||||||||||||| |
|
|
| T |
28669586 |
attacttgcagtctaagcaactag-tcgcagagtaattagctacactataacacatgatagcttaat----gtagacaagcattctgtctatatatactt |
28669492 |
T |
|
| Q |
258 |
gctgtaa |
264 |
Q |
| |
|
||||||| |
|
|
| T |
28669491 |
gctgtaa |
28669485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 334 - 414
Target Start/End: Original strand, 11922145 - 11922225
Alignment:
| Q |
334 |
ttttctgttgtgcattcttccttgttcatcttcttggatcgatttcttcacgatcctttgtttctgattgcagattctgca |
414 |
Q |
| |
|
||||||| | |||||| || ||| |||||||||| ||||| |||||||| ||| ||||| | ||||||||||||||||| |
|
|
| T |
11922145 |
ttttctgctatgcatttctctttgatcatcttcttcgatcgttttcttcaagattctttgcatttgattgcagattctgca |
11922225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 514 - 557
Target Start/End: Original strand, 11922345 - 11922389
Alignment:
| Q |
514 |
ttcttcttca-ctttgtgattttcacatcgtattggtgtgaattt |
557 |
Q |
| |
|
|||||||||| ||||||||||||| |||| ||||||||||||||| |
|
|
| T |
11922345 |
ttcttcttcatctttgtgattttcgcatcatattggtgtgaattt |
11922389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University