View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20914_low_20 (Length: 317)

Name: NF20914_low_20
Description: NF20914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20914_low_20
NF20914_low_20
[»] chr8 (2 HSPs)
chr8 (6-289)||(10397291-10397565)
chr8 (272-302)||(10397567-10397597)
[»] chr4 (2 HSPs)
chr4 (150-217)||(24181731-24181798)
chr4 (185-220)||(37660888-37660923)
[»] chr2 (1 HSPs)
chr2 (167-224)||(12454009-12454066)
[»] chr1 (1 HSPs)
chr1 (150-217)||(16853674-16853741)
[»] chr6 (1 HSPs)
chr6 (167-225)||(20117191-20117249)


Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 6 - 289
Target Start/End: Original strand, 10397291 - 10397565
Alignment:
Q  6 aagagcaatcacacaacatctctcccaatctccatcaagttgagtcaaagctctaatatcattgttggtggacgatgagggaaagcctcaccgagttaaa 105  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||   || |||||||| |||||||||||||||||    
T  10397291 aagaacaatcacacaacatctctcccaatctccatcaagttgagtcagagctctaatatcattgttgg---acaatgagggagagcctcaccgagttaaa 10397387  T
Q  106 tcatcacattaagctaatagcaaccacctaactaaatgtgttgaacaccatatcatcgccaaaaaccttaaaacattaaatttattgatcctctcactta 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||      |||||| ||||||||||||    
T  10397388 tcatcacattaagctaatagcaaccacctaactaaatgtgttgaacaccatatcatcaccaaaaaccttaaaaca------ttattggtcctctcactta 10397481  T
Q  206 tatgttgttcaacctcaacccctccgatcaatgtaagactttaacttacacttgagacttgacatatcacaacaaaatgaatca 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10397482 tatgttgttcaacctcaacccctccgatcaatgtaagactttaacttacacttgagacttgacatatcacaacaaaatgaatca 10397565  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 302
Target Start/End: Original strand, 10397567 - 10397597
Alignment:
Q  272 tcacaacaaaatgaatcattcatcaagagat 302  Q
    |||||||||||||||||||||||||||||||    
T  10397567 tcacaacaaaatgaatcattcatcaagagat 10397597  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 217
Target Start/End: Original strand, 24181731 - 24181798
Alignment:
Q  150 acaccatatcatcgccaaaaaccttaaaacattaaatttattgatcctctcacttatatgttgttcaa 217  Q
    ||||||||||||| || ||||||||||| |||||  | |||||||| ||||||||||||||| |||||    
T  24181731 acaccatatcatcacccaaaaccttaaagcattatgtatattgatcatctcacttatatgtttttcaa 24181798  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 37660888 - 37660923
Alignment:
Q  185 atttattgatcctctcacttatatgttgttcaacct 220  Q
    |||||||| |||||||||||||||||||||||||||    
T  37660888 atttattggtcctctcacttatatgttgttcaacct 37660923  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 224
Target Start/End: Complemental strand, 12454066 - 12454009
Alignment:
Q  167 aaaaccttaaaacattaaatttattgatcctctcacttatatgttgttcaacctcaac 224  Q
    |||| |||||||||||| |||||| | || |||||||||||||||||||||| |||||    
T  12454066 aaaaacttaaaacattagatttatgggtcatctcacttatatgttgttcaacttcaac 12454009  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 217
Target Start/End: Complemental strand, 16853741 - 16853674
Alignment:
Q  150 acaccatatcatcgccaaaaaccttaaaacattaaatttattgatcctctcacttatatgttgttcaa 217  Q
    |||||| |||||| || ||||||||||| |||||  | |||||||| ||||||||||||||| |||||    
T  16853741 acaccacatcatcacccaaaaccttaaagcattatgtatattgatcatctcacttatatgtttttcaa 16853674  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 20117249 - 20117191
Alignment:
Q  167 aaaaccttaaaacattaaatttattgatcctctcacttatatgttgttcaacctcaacc 225  Q
    |||||||||| ||||| |||||||   | ||||||||||||||||||||||| ||||||    
T  20117249 aaaaccttaagacattgaatttatgagtactctcacttatatgttgttcaacttcaacc 20117191  T

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