View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20914_low_24 (Length: 292)
Name: NF20914_low_24
Description: NF20914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20914_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 24 - 130
Target Start/End: Complemental strand, 54086047 - 54085941
Alignment:
| Q |
24 |
attcaccaatcctaatccaattatcaattttatccttaaaccttttcaatttcaatttccctctctcaattacgcggaatactgttagaatttcaaaata |
123 |
Q |
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| T |
54086047 |
attcaccaatcctaatccaattatcaattctatccttaaaccttttcaatttcaatttccctctctcaattacgcggaatactgttagaatttcaaaata |
54085948 |
T |
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| Q |
124 |
ccattcc |
130 |
Q |
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||||||| |
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| T |
54085947 |
ccattcc |
54085941 |
T |
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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 276
Target Start/End: Complemental strand, 54085834 - 54085795
Alignment:
| Q |
237 |
gaaactggatatatgtttgaccgtttaggttttgatatat |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
54085834 |
gaaactggatatatgtttgaccgtttaggttttgatatat |
54085795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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