View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20914_low_26 (Length: 251)
Name: NF20914_low_26
Description: NF20914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20914_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 7534835 - 7534602
Alignment:
| Q |
1 |
catgtagtatgttgggagatattagtgagggaatgctccactttgaatccatgagcaaagactatggcattgtaccaacaatggcccattatgtcagtct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7534835 |
catgtagtatgttgggagatattagtgagggaatgctccactttgaatccatgagcaaagactatggcattgtaccaacaatggcccattatgtcagtct |
7534736 |
T |
|
| Q |
101 |
agtagagatgattgctagtattgggcatcttgatgaagcattggagttcattgaaaagatgccaatggaaccaagtgtagaggtatgggagactttgatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7534735 |
agtagagatgattgctagtattgggcatcttgatgaagcattggagttcattgaaaagatgccaatggaaccaagtgtagaggtatgggagactttgatg |
7534636 |
T |
|
| Q |
201 |
aatagttgcagagttcatggaaacattgagttgg |
234 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
7534635 |
aatagttgcagagttcatggaaacattgagttgg |
7534602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 7449297 - 7449064
Alignment:
| Q |
1 |
catgtagtatgttgggagatattagtgagggaatgctccactttgaatccatgagcaaagactatggcattgtaccaacaatggcccattatgtcagtct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7449297 |
catgtagtatgttgggagatattagtgagggaatgctgcactttgaatccatgagcaaagactatggcattgtaccaacaatggcccattatgtcagtct |
7449198 |
T |
|
| Q |
101 |
agtagagatgattgctagtattgggcatcttgatgaagcattggagttcattgaaaagatgccaatggaaccaagtgtagaggtatgggagactttgatg |
200 |
Q |
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| T |
7449197 |
agtagagatgattgctagtattgggcatcttgatgaagccttggagttcattgaaaagatgccaatggaaccaaatgtagaggtatggaagactttgatg |
7449098 |
T |
|
| Q |
201 |
aatagttgcagagttcatggaaacattgagttgg |
234 |
Q |
| |
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||||||||||||||||||||||||| |||||||| |
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| T |
7449097 |
aatagttgcagagttcatggaaacactgagttgg |
7449064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 18664286 - 18664057
Alignment:
| Q |
1 |
catgtagtatgttgggagatattagtgagggaatgctccactttgaatccatgagcaaagactatggcattgtaccaacaatggcccattatgtcagtct |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||||||||||||||| | ||||||| |||||||||||| |||| |||||||| ||||| |
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| T |
18664286 |
catgtagtatgttgggagatattgttgagggaatgctgcactttgaatccatgagtagggactatgacattgtaccaactatggaacattatgtaagtct |
18664187 |
T |
|
| Q |
101 |
agtagagatgattgctagtattgggcatcttgatgaagcattggagttcattgaaaagatgccaatggaaccaagtgtagaggtatgggagactttgatg |
200 |
Q |
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|||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18664186 |
agtagacatgattggtagtattgggcatcttgatgaagccttggagttcattgaaaagatgccaatggaaccaagtgtagaggtatgggagactttgatg |
18664087 |
T |
|
| Q |
201 |
aatagttgcagagttcatggaaacattgag |
230 |
Q |
| |
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|||||||| |||||||||||||||| |||| |
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|
| T |
18664086 |
aatagttgtagagttcatggaaacactgag |
18664057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 15079542 - 15079771
Alignment:
| Q |
1 |
catgtagtatgttgggagatattagtgagggaatgctccactttgaatccatgagcaaagactatggcattgtaccaacaatggcccattatgtcagtct |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||||||||||||||| | ||||||| ||||||||||| |||| |||||||| ||| | |
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| T |
15079542 |
catgtagtatgttgggagatattgttgagggaatgctgcactttgaatccatgagtagggactatgaaattgtaccaactatggaacattatgtaagtat |
15079641 |
T |
|
| Q |
101 |
agtagagatgattgctagtattgggcatcttgatgaagcattggagttcattgaaaagatgccaatggaaccaagtgtagaggtatgggagactttgatg |
200 |
Q |
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|||||| ||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15079642 |
agtagacatgattggtagtattgggaatcttgatgaagccttggagttcattgaaaagatgccaatggaaccaagtgtagaggtatgggagactttgatg |
15079741 |
T |
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| Q |
201 |
aatagttgcagagttcatggaaacattgag |
230 |
Q |
| |
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|||||||| |||||||||||||||| |||| |
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| T |
15079742 |
aatagttgtagagttcatggaaacactgag |
15079771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 172
Target Start/End: Original strand, 24416372 - 24416413
Alignment:
| Q |
131 |
tgatgaagcattggagttcattgaaaagatgccaatggaacc |
172 |
Q |
| |
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||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
24416372 |
tgatgaagcattggaattcattgaaaagatgccaatagaacc |
24416413 |
T |
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