View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20914_low_28 (Length: 246)

Name: NF20914_low_28

Description: NF20914

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF20914_low_28

[»] chr7 (1 HSPs)

[»] chr3 (1 HSPs)

Target: chr7 (Bit Score: 104; Significance: 6e-52; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 104; E-Value: 6e-52

Query Start/End: Original strand, 18 - 125

Target Start/End: Original strand, 27380995 - 27381102

Alignment:

Q	18	gttgtttagattttgatttccagtgaaagcggcgaaagggacgcatataaagaaaaaacaattgttgttggaagtcttggaggttgagaagccattaata	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	27380995	gttgtttagattttgatttccagtgaaagcggcgaaagggacgcatataaagaaaaaacaattgttgttggaagtcttggaggttgagaagccattaata	27381094	T

Q	118	atgtgtgt	125	Q
		\|\|\|\|\|\|\|
T	27381095	gtgtgtgt	27381102	T

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Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 83; E-Value: 2e-39

Query Start/End: Original strand, 150 - 232

Target Start/End: Original strand, 54086072 - 54086154

Alignment:

Q	150	caatggagaaacggaaactcacgttttgatctgatccggggtgattagggtgaaattggggagtttgagaattggagaataat	232	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	54086072	caatggagaaacggaaactcacgttttgatctgatccggggtgattagggtgaaattggggagtttgagaattggagaataat	54086154	T

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