View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20914_low_3 (Length: 544)
Name: NF20914_low_3
Description: NF20914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20914_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 30666092 - 30666336
Alignment:
| Q |
16 |
catttatacataaagagacttatattgataggctcttatattttgaatgtttaattaagttgttcatccaaacagacttagcatatgtttgaattgatag |
115 |
Q |
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| T |
30666092 |
catttatacataaagagacttatattgataagctcttatattttgaatgtttaattaagttgttcatccaaacagacttagcatatgtttgaattgatag |
30666191 |
T |
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| Q |
116 |
tgactagtgagtttagcggaaacacagtgtgtcacttcattttgtcgaaagctaaactttggaatttcaaacaaaatcacatactgtgatttcaccaaac |
215 |
Q |
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| T |
30666192 |
tgactagtgagtttagcggaaacacagtgtgtcacttgattttttcgaaagctaaactttggaatttcaaacaaaatcacatactgtgatttcaccaaac |
30666291 |
T |
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| Q |
216 |
tcaccaccaactcaaagatgcatttattggtgatgtgttgattaa |
260 |
Q |
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| T |
30666292 |
tcaccaccaactcaaagatgcatttgttggtgatgtgttgattaa |
30666336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 406 - 534
Target Start/End: Original strand, 30666482 - 30666610
Alignment:
| Q |
406 |
ataatgcaaaacttgagtatctttatttgtggctatgtttcaggtatatatgtaagcatgcttgttgttacttccctgtcacgcttcatgtagaggatat |
505 |
Q |
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| T |
30666482 |
ataatgcaaaacttgagtatctttatttgtggctatgtttcaggtatatatgtaagcatgcttgtagttacttccctgtcacgcttcatgtagaggatat |
30666581 |
T |
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| Q |
506 |
aaaggctttccatccaaatcgtgcctatg |
534 |
Q |
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| T |
30666582 |
aaaggctttccatccaaatcgtgcttatg |
30666610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 313 - 366
Target Start/End: Original strand, 30666389 - 30666442
Alignment:
| Q |
313 |
atggtgattcctattgatgaaaagagcttattcggtcgaaaattagcaaggtac |
366 |
Q |
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| T |
30666389 |
atggtgattcctattgatgaaaagagcttatttggtcgaaaattagccaggtac |
30666442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 443 - 534
Target Start/End: Complemental strand, 10114224 - 10114133
Alignment:
| Q |
443 |
tttcaggtatatatgtaagcatgcttgttgttacttccctgtcacgcttcatgtagaggatataaaggctttccatccaaatcgtgcctatg |
534 |
Q |
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| T |
10114224 |
tttcaggtacatatgcaagcatgcgtgtagttactttccgattacgcttcatgtagaggatataaaagcatttgatcctaatcgtgcttatg |
10114133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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