View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20914_low_4 (Length: 543)
Name: NF20914_low_4
Description: NF20914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20914_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 15 - 367
Target Start/End: Original strand, 365864 - 366216
Alignment:
| Q |
15 |
aagtaatgatttgagaaagtgagagtatggaaaatgtctatgagagctgtttgagatttggcgccattgttgatgagactgtggacatttgaggttatgg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
365864 |
aagtaatgatttgagaaagtgagagtatggaaaatgtctatgagagctgtttgagattcggcgtcattgttgatgagactgtggacatttgaggttatgg |
365963 |
T |
|
| Q |
115 |
ttttgaatttgttgacgaaatggaagtcgtcggaagaaattaggaggctaatgagattagggtgtttttggaagggacgagtggtggatgatgatggtta |
214 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
365964 |
ttttgaatttgttgacgaaatggaaatcgtcagaagaaattaggaggctaatgagattagggtgtttttggaagggacgagtggtggatgatgatggtta |
366063 |
T |
|
| Q |
215 |
taggaaagagaggttgtaatagaacgatgaaggtgttgtatgtaatgagagacatgtatgtgatataatgaggttgaggggaagaattggtttgtaagaa |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
366064 |
taggaaagagaggttgtaatagaacgatgaaggtgttgtatgtaatgagagacatgcatgtaatgtaatgaggttgaggggaagaattggtttgtaagaa |
366163 |
T |
|
| Q |
315 |
tgagaagaatttgaagtcttactgaggagtggtgttgatgatgttgcttcttc |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
366164 |
tgagaagaatttgaagtcttactgaggagtggtgttgatgatgttgcttcttc |
366216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 435 - 531
Target Start/End: Original strand, 366284 - 366380
Alignment:
| Q |
435 |
cggtatgattcttagatctatttagaattcatttgtgttcttttctagaggaaggatcgatttcaatgttgttgttgtgttgaaggaggtggtttgt |
531 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
366284 |
cggtatgattcttagatctatttagaattcatttgtgttcttttctggaggaaggattgatttcaatgttgttgttgtgttgaaggaggtggtttgt |
366380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University