View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20914_low_5 (Length: 543)

Name: NF20914_low_5
Description: NF20914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20914_low_5
NF20914_low_5
[»] chr5 (2 HSPs)
chr5 (249-530)||(24103701-24103982)
chr5 (21-229)||(24104123-24104335)
[»] chr6 (30 HSPs)
chr6 (246-530)||(4266312-4266596)
chr6 (255-530)||(4458297-4458572)
chr6 (21-229)||(4265945-4266153)
chr6 (277-537)||(4514301-4514558)
chr6 (278-523)||(4506566-4506808)
chr6 (287-526)||(4481399-4481635)
chr6 (21-131)||(4471047-4471157)
chr6 (47-128)||(4462343-4462424)
chr6 (293-523)||(3172450-3172677)
chr6 (49-116)||(4482010-4482077)
chr6 (49-116)||(4575600-4575667)
chr6 (30-144)||(4489094-4489208)
chr6 (49-114)||(4561809-4561874)
chr6 (21-125)||(4623443-4623547)
chr6 (21-116)||(4503181-4503276)
chr6 (30-116)||(3173148-3173234)
chr6 (409-526)||(4575014-4575131)
chr6 (293-328)||(4593135-4593170)
chr6 (38-116)||(4255544-4255622)
chr6 (38-132)||(4259081-4259175)
chr6 (441-523)||(4503726-4503808)
chr6 (293-324)||(4617930-4617961)
chr6 (41-116)||(4627295-4627370)
chr6 (293-331)||(4462021-4462059)
chr6 (278-328)||(4470704-4470754)
chr6 (278-328)||(4489542-4489592)
chr6 (441-526)||(4299162-4299247)
chr6 (409-526)||(4561210-4561327)
chr6 (280-328)||(4503652-4503700)
chr6 (280-328)||(4575209-4575257)
[»] chr8 (2 HSPs)
chr8 (450-526)||(20863193-20863269)
chr8 (293-328)||(20863039-20863074)
[»] chr3 (1 HSPs)
chr3 (296-328)||(1282018-1282050)
[»] scaffold0477 (1 HSPs)
scaffold0477 (21-116)||(3410-3505)
[»] chr7 (1 HSPs)
chr7 (21-128)||(3087878-3087985)
[»] scaffold0288 (1 HSPs)
scaffold0288 (53-117)||(2374-2438)


Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 249 - 530
Target Start/End: Complemental strand, 24103982 - 24103701
Alignment:
Q  249 tgtgtgtgtaaagtttcaactattgacatacttttgcaattgtaatatgcagatgagagttatctaacaaatggatatttagatgataaagttggtggct 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||     
T  24103982 tgtgtgtgtaaagtttcaactattgacatacttttgcaattgtaatatgcagatgagagttatctaacaaatggatatttagacaataaagttggtggca 24103883  T
Q  349 ggtttccaggtttgcataactttaggtttaaggaccttcctgattttacatggattacagatcctaatgatttgatgataaagtttattaccgaagtggc 448  Q
    || ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  24103882 ggattccaggtttgcataactttaggttgaaggaccttcctgattttacaaggattacagatcctaatgatttgatgataaaatttattaccgaagtggc 24103783  T
Q  449 ggatagatgtcacagagcctcttctattgttatcaatacttcatatgaaattgagattgatgttatgaatgctctctactct 530  Q
    ||  ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  24103782 ggtaagatgtcacagagcctcttctattgttatcaatacttcatatgaacttgagagtgatgttatgaatgctctctactct 24103701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 21 - 229
Target Start/End: Complemental strand, 24104335 - 24104123
Alignment:
Q  21 tgccaatgatggtgttattccaccaattacttgcttagtttcggattgttacatgccatttacagttgat----gctgctgaaaaacatgcactcccaat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||| |||| ||||||||||||||||    
T  24104335 tgccaatgatggtgttattccaccaattacttgcttagtttcggattgttacatgccatttacagttgatcgatgctgttgaagaacatgcactcccaat 24104236  T
Q  117 cattttcttttctccatgcaatgcatctaccttcttgtgtacttttcaatttcctagtctgattcgaaaaggtctactgcctctcaaaggtaaaaattat 216  Q
      |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||| | || ||||||||||||||||||    
T  24104235 tcttttcttttctccatgcaatgcatctaccttcttgtgtacttttcaatatcctaatctgattcaaaaaggtctagtaccactcaaaggtaaaaattat 24104136  T
Q  217 gatccttttttct 229  Q
    |||||||||||||    
T  24104135 gatccttttttct 24104123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 233; Significance: 1e-128; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 246 - 530
Target Start/End: Original strand, 4266312 - 4266596
Alignment:
Q  246 gtctgtgtgtgtaaagtttcaactattgacatacttttgcaattgtaatatgcagatgagagttatctaacaaatggatatttagatgataaagttggtg 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4266312 gtctgtgtgtgtaaagtttcaactattgacatacttttgcaattgcgatatgcagatgagagttatctaacaaatggatatttagataataaagttggtg 4266411  T
Q  346 gctggtttccaggtttgcataactttaggtttaaggaccttcctgattttacatggattacagatcctaatgatttgatgataaagtttattaccgaagt 445  Q
     |||| ||| ||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  4266412 actggattcaaggtttgcaaaactttaggttgaaggaccttcctgattttacaaggattacagatcctaatgatttgatgataaaatttattaccgaagt 4266511  T
Q  446 ggcggatagatgtcacagagcctcttctattgttatcaatacttcatatgaaattgagattgatgttatgaatgctctctactct 530  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  4266512 ggcggatagatgtcaccgagcctcttctattgttatcaatacttcatatgaacttgagagtgatgttatgaatgctctctactct 4266596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 255 - 530
Target Start/End: Complemental strand, 4458572 - 4458297
Alignment:
Q  255 tgtaaagtttcaactattgacatacttttgcaattgtaatatgcagatgagagttatctaacaaatggatatttagatgataaagttggtggctggtttc 354  Q
    |||||||||||||||||| ||||||||||||||||  |||||||||| ||||||||| |||||||||||||||| ||  | ||||| |||| |||| ||     
T  4458572 tgtaaagtttcaactattaacatacttttgcaattacaatatgcagaagagagttatttaacaaatggatatttggacaaaaaagtcggtgactggattt 4458473  T
Q  355 caggtttgcataactttaggtttaaggaccttcctgattttacatggattacagatcctaatgatttgatgataaagtttattaccgaagtggcggatag 454  Q
    |||||||||| ||||||||||| ||||||||||||||||||| |  |||||||||||||||| ||||||||||||| ||||| ||||||||||| |||||    
T  4458472 caggtttgcaaaactttaggttgaaggaccttcctgattttataaagattacagatcctaataatttgatgataaaatttataaccgaagtggcagatag 4458373  T
Q  455 atgtcacagagcctcttctattgttatcaatacttcatatgaaattgagattgatgttatgaatgctctctactct 530  Q
    |||||| ||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||| |||||||||||    
T  4458372 atgtcatagagcctcttctattgttatcaatacttcttatgaacttgagagtgatgttatgaatactctctactct 4458297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 21 - 229
Target Start/End: Original strand, 4265945 - 4266153
Alignment:
Q  21 tgccaatgatggtgttattccaccaattacttgcttagtttcggattgttacatgccatttacagttgatgctgctgaaaaacatgcactcccaatcatt 120  Q
    ||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||| |||||| | |||||||| ||| ||||||||||||||||| ||    
T  4265945 tgccaatgatggttttattccaccaattacttgcttggtttccgattgttacatgccttttacaatagatgctgcggaagaacatgcactcccaatcctt 4266044  T
Q  121 ttcttttctccatgcaatgcatctaccttcttgtgtacttttcaatttcctagtctgattcgaaaaggtctactgcctctcaaaggtaaaaattatgatc 220  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||| ||||||||||    
T  4266045 ttcttttctccatgcaatgcatctacgttcttgtgtacttttcaatttcctactctgattcgaaaaggtctactaccactcaaaggtaacaattatgatc 4266144  T
Q  221 cttttttct 229  Q
    |||||||||    
T  4266145 cttttttct 4266153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 277 - 537
Target Start/End: Original strand, 4514301 - 4514558
Alignment:
Q  277 tacttttgcaattgtaatatgcagatgagagttatctaacaaatggatatttagatgataaagttggtggctggtttccaggtttgcataactttaggtt 376  Q
    ||||||||||||| | ||||||||||||||||||| | |||||||||||||| ||   ||||||   || |||| ||||||||||||  ||||||||  |    
T  4514301 tacttttgcaattatgatatgcagatgagagttatttgacaaatggatatttggacactaaagt---tgactggattccaggtttgcgaaactttagact 4514397  T
Q  377 taaggaccttcctgattttacatggattacagatcctaatgatttgatgataaagtttattaccgaagtggcggatagatgtcacagagcctcttctatt 476  Q
     ||||||||||||||||||| | |||  |||||| |||||||||||||| || | |||||    ||| |||  ||||||  ||| ||||| ||| |||||    
T  4514398 gaaggaccttcctgattttatacggacaacagatgctaatgatttgatgttagaatttatctttgaaatggtagatagacttcatagagcttctgctatt 4514497  T
Q  477 gttatcaatacttcatatgaaattgagattgatgttatgaatgctctctactctgtgctcc 537  Q
     || | ||||||||  ||||  |||||| |||||||||||||||||| || ||| ||||||    
T  4514498 tttttaaatacttctaatgatcttgagagtgatgttatgaatgctctttattctatgctcc 4514558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 278 - 523
Target Start/End: Complemental strand, 4506808 - 4506566
Alignment:
Q  278 acttttgcaattgtaatatgcagatgagagttatctaacaaatggatatttagatgataaagttggtggctggtttccaggtttgcataactttaggttt 377  Q
    ||||||| |||| | |||||||||||||||||||||||||||||||||||| ||   ||| || |    |||| |||||||||||   ||||||||  |     
T  4506808 acttttgtaattatgatatgcagatgagagttatctaacaaatggatatttggacactaaggtaga---ctggattccaggtttgagaaactttagactg 4506712  T
Q  378 aaggaccttcctgattttacatggattacagatcctaatgatttgatgataaagtttattaccgaagtggcggatagatgtcacagagcctcttctattg 477  Q
    || || ||||||||||||| | |||  ||||||||||| ||||||| |||| | |||||||  ||||  || || | || ||| ||||||||||||||||    
T  4506711 aaagatcttcctgattttataaggacaacagatcctaacgatttgaggatagaatttattattgaagcagcagaaacatttcatagagcctcttctattg 4506612  T
Q  478 ttatcaatacttcatatgaaattgagattgatgttatgaatgctct 523  Q
    || ||||||||||  ||||| |||||| | ||||| ||||||||||    
T  4506611 ttctcaatacttctaatgaacttgagagtaatgttctgaatgctct 4506566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 287 - 526
Target Start/End: Complemental strand, 4481635 - 4481399
Alignment:
Q  287 attgtaatatgcagatgagagttatctaacaaatggatatttagatgataaagttggtggctggtttccaggtttgcataactttaggtttaaggacctt 386  Q
    ||||| ||||||||||||||||||| ||||| |||||||||| || |  | ||| |    |||| ||||||||||| | |||||||| || |||||||||    
T  4481635 attgtgatatgcagatgagagttatttaacagatggatatttggacgcaacagtaga---ctggattccaggtttgaaaaactttagattgaaggacctt 4481539  T
Q  387 cctgattttacatggattacagatcctaatgatttgatgataaagtttattaccgaagtggcggatagatgtcacagagcctcttctattgttatcaata 486  Q
    |||||||| |    | | |||||||||||| | ||||| ||||| | ||  |  |||||| | |||| |||||| ||||| ||| || ||||||||||||    
T  4481538 cctgatttaattaaggtaacagatcctaatcacttgatcataaaatataaaaatgaagtgacagataaatgtcaaagagcatctgcttttgttatcaata 4481439  T
Q  487 cttcatatgaaattgagattgatgttatgaatgctctcta 526  Q
    |||| |||||| |||||| ||||||||||||| |||||||    
T  4481438 cttcttatgaacttgagagtgatgttatgaattctctcta 4481399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 21 - 131
Target Start/End: Complemental strand, 4471157 - 4471047
Alignment:
Q  21 tgccaatgatggtgttattccaccaattacttgcttagtttcggattgttacatgccatttacagttgatgctgctgaaaaacatgcactcccaatcatt 120  Q
    ||||| || |||| |||| || ||| |||||||| || |||| ||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| ||    
T  4471157 tgccactgctggtcttatccctccagttacttgcataatttctgattgttacatgccatttacagtagatgctgctgaagaacgtgcactcccaatcgtt 4471058  T
Q  121 ttcttttctcc 131  Q
     ||||||||||    
T  4471057 ctcttttctcc 4471047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 47 - 128
Target Start/End: Complemental strand, 4462424 - 4462343
Alignment:
Q  47 ttacttgcttagtttcggattgttacatgccatttacagttgatgctgctgaaaaacatgcactcccaatcattttcttttc 128  Q
    |||||||| ||||||| ||||||||||||||||||||||| ||||| |||||| ||| ||||||||||||| || |||||||    
T  4462424 ttacttgcatagtttctgattgttacatgccatttacagtggatgccgctgaacaacgtgcactcccaatcgttctcttttc 4462343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 293 - 523
Target Start/End: Complemental strand, 3172677 - 3172450
Alignment:
Q  293 atatgcagatgagagttatctaacaaatggatatttagatgataaagttggtggctggtttccaggtttgcataactttaggtttaaggaccttcctgat 392  Q
    |||||||||||||||||||  ||||||||||||||| ||   || |||||    |||| ||||||||||| | |||||||| || ||| | ||||||  |    
T  3172677 atatgcagatgagagttatgaaacaaatggatatttggacactatagttga---ctggattccaggtttgaaaaactttagattgaagcatcttcctact 3172581  T
Q  393 tttacatggattacagatcctaatgatttgatgataaagtttattaccgaagtggcggatagatgtcacagagcctcttctattgttatcaatacttcat 492  Q
    || |   |||| | |||||||||||||||||||||| | ||||| |  ||||| |  |||| |||||||| ||| ||| |||||||| |||| |||||      
T  3172580 ttaattaggataaaagatcctaatgatttgatgatagaatttatgattgaagtaggagataaatgtcacaaagcttctgctattgttttcaacacttcta 3172481  T
Q  493 atgaaattgagattgatgttatgaatgctct 523  Q
    ||||| |||||| ||||||||||||| ||||    
T  3172480 atgaacttgagagtgatgttatgaatactct 3172450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 49 - 116
Target Start/End: Complemental strand, 4482077 - 4482010
Alignment:
Q  49 acttgcttagtttcggattgttacatgccatttacagttgatgctgctgaaaaacatgcactcccaat 116  Q
    |||||||||||||| ||||| ||||||||||||||||| |||||||| ||| ||||||||||||||||    
T  4482077 acttgcttagtttctgattgctacatgccatttacagtagatgctgccgaagaacatgcactcccaat 4482010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 49 - 116
Target Start/End: Complemental strand, 4575667 - 4575600
Alignment:
Q  49 acttgcttagtttcggattgttacatgccatttacagttgatgctgctgaaaaacatgcactcccaat 116  Q
    |||||||||||||| ||||| ||||||||||||||||| |||||||||||| ||||||| ||||||||    
T  4575667 acttgcttagtttctgattgctacatgccatttacagtagatgctgctgaagaacatgccctcccaat 4575600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 4489094 - 4489208
Alignment:
Q  30 tggtgttattccaccaattacttgcttagtttcggattgttacatgccatttacagttgatgctgctgaaaaacatgcactcccaatcattttcttttct 129  Q
    |||| |||| || ||| |||||||||||||||| |||||  | ||| |||||||||| |||||||||||| ||||||||||||||||  || |||||||     
T  4489094 tggtcttatccctccagttacttgcttagtttctgattgcaatatggcatttacagtagatgctgctgaagaacatgcactcccaattgttctcttttcc 4489193  T
Q  130 ccatgcaatgcatct 144  Q
    ||||| | |||||||    
T  4489194 ccatgtagtgcatct 4489208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 4561874 - 4561809
Alignment:
Q  49 acttgcttagtttcggattgttacatgccatttacagttgatgctgctgaaaaacatgcactccca 114  Q
    |||||||||||||| ||||| ||||||||||||||||| | |||||||||| ||||||||||||||    
T  4561874 acttgcttagtttctgattgctacatgccatttacagtagctgctgctgaagaacatgcactccca 4561809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 4623547 - 4623443
Alignment:
Q  21 tgccaatgatggtgttattccaccaattacttgcttagtttcggattgttacatgccatttacagttgatgctgctgaaaaacatgcactcccaatcatt 120  Q
    ||||| || |||| || |||||||| |||||||||||||||| |||||||||||| |||||||| |  | ||||||||| | ||||||||||||||  ||    
T  4623547 tgccactgctggtcttgttccaccagttacttgcttagtttccgattgttacatgtcatttacaatacaagctgctgaagagcatgcactcccaattgtt 4623448  T
Q  121 ttctt 125  Q
    |||||    
T  4623447 ttctt 4623443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 4503181 - 4503276
Alignment:
Q  21 tgccaatgatggtgttattccaccaattacttgcttagtttcggattgttacatgccatttacagttgatgctgctgaaaaacatgcactcccaat 116  Q
    ||||| || |||| |||| || ||| |||||||||||||||| |||||  ||||||||||| ||||  ||||||||||| ||||| ||||||||||    
T  4503181 tgccactgctggtcttatccctccagttacttgcttagtttctgattgcaacatgccatttccagtatatgctgctgaagaacatacactcccaat 4503276  T

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Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 30 - 116
Target Start/End: Complemental strand, 3173234 - 3173148
Alignment:
Q  30 tggtgttattccaccaattacttgcttagtttcggattgttacatgccatttacagttgatgctgctgaaaaacatgcactcccaat 116  Q
    |||| |||| || ||| |||||||||| ||||| ||||| || |||||||||||||| |||| ||||||| ||||||| ||||||||    
T  3173234 tggtcttatacctccagttacttgctttgtttccgattgctatatgccatttacagtagatgttgctgaagaacatgctctcccaat 3173148  T

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Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 409 - 526
Target Start/End: Complemental strand, 4575131 - 4575014
Alignment:
Q  409 atcctaatgatttgatgataaagtttattaccgaagtggcggatagatgtcacagagcctcttctattgttatcaatacttcatatgaaattgagattga 508  Q
    |||||||||| |||| |||||  |||| ||| |||||||| |||| |||||| ||||| |||  ||| ||  ||||||||||  ||||| |||||| |||    
T  4575131 atcctaatgacttgacgataagatttaatactgaagtggcagataaatgtcatagagcttctggtatggtattcaatacttctaatgaacttgagagtga 4575032  T
Q  509 tgttatgaatgctctcta 526  Q
    ||||||||||||| ||||    
T  4575031 tgttatgaatgctttcta 4575014  T

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Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 293 - 328
Target Start/End: Complemental strand, 4593170 - 4593135
Alignment:
Q  293 atatgcagatgagagttatctaacaaatggatattt 328  Q
    ||||||||||||||||||||||||||||||||||||    
T  4593170 atatgcagatgagagttatctaacaaatggatattt 4593135  T

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Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 116
Target Start/End: Original strand, 4255544 - 4255622
Alignment:
Q  38 ttccaccaattacttgcttagtttcggattgttacatgccatttacagttgatgctgctgaaaaacatgcactcccaat 116  Q
    |||||| | |||||||||||||||| |||||||||||| |||||||  |  | ||||||||| | ||||||||||||||    
T  4255544 ttccactagttacttgcttagtttctgattgttacatgtcatttaccatacaagctgctgaagagcatgcactcccaat 4255622  T

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Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 132
Target Start/End: Original strand, 4259081 - 4259175
Alignment:
Q  38 ttccaccaattacttgcttagtttcggattgttacatgccatttacagttgatgctgctgaaaaacatgcactcccaatcattttcttttctcca 132  Q
    |||||||  |||||||||||||||| |||||||||||| ||||||   |  | ||||||||| | ||||||||||||||  ||||||| ||||||    
T  4259081 ttccacctgttacttgcttagtttctgattgttacatgtcatttagtatacaagctgctgaagagcatgcactcccaattgttttcttctctcca 4259175  T

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Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 523
Target Start/End: Original strand, 4503726 - 4503808
Alignment:
Q  441 gaagtggcggatagatgtcacagagcctcttctattgttatcaatacttcatatgaaattgagattgatgttatgaatgctct 523  Q
    |||||||| |||| |||||| ||||||||  | |||||| ||||||||||  ||||| |||||| ||||| ||||||||||||    
T  4503726 gaagtggcagataaatgtcaaagagcctcagccattgttttcaatacttctaatgaacttgagagtgatgctatgaatgctct 4503808  T

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Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 324
Target Start/End: Complemental strand, 4617961 - 4617930
Alignment:
Q  293 atatgcagatgagagttatctaacaaatggat 324  Q
    ||||||||||||||||||||||||||||||||    
T  4617961 atatgcagatgagagttatctaacaaatggat 4617930  T

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Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 116
Target Start/End: Complemental strand, 4627370 - 4627295
Alignment:
Q  41 caccaattacttgcttagtttcggattgttacatgccatttacagttgatgctgctgaaaaacatgcactcccaat 116  Q
    ||||| |||||||||||||||| |||||||  ||| |||||||  |  | ||||||||| ||||||||||||||||    
T  4627370 caccagttacttgcttagtttcagattgtttaatgtcatttaccatacaagctgctgaagaacatgcactcccaat 4627295  T

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Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 293 - 331
Target Start/End: Complemental strand, 4462059 - 4462021
Alignment:
Q  293 atatgcagatgagagttatctaacaaatggatatttaga 331  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  4462059 atatgcagatgagatttatctaacagatggatatttaga 4462021  T

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Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 328
Target Start/End: Complemental strand, 4470754 - 4470704
Alignment:
Q  278 acttttgcaattgtaatatgcagatgagagttatctaacaaatggatattt 328  Q
    |||||| ||||| | ||||||||||||||||||||||| | ||||||||||    
T  4470754 actttttcaattatgatatgcagatgagagttatctaatagatggatattt 4470704  T

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Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 328
Target Start/End: Original strand, 4489542 - 4489592
Alignment:
Q  278 acttttgcaattgtaatatgcagatgagagttatctaacaaatggatattt 328  Q
    ||||||| |||||| |||||||||||||||| |||||||| ||||| ||||    
T  4489542 acttttgaaattgtgatatgcagatgagagtaatctaacagatggaaattt 4489592  T

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Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 526
Target Start/End: Original strand, 4299162 - 4299247
Alignment:
Q  441 gaagtggcggatagatgtcacagagcctcttctattgttatcaatacttcatatgaaattgagattgatgttatgaatgctctcta 526  Q
    |||| ||| ||||||| ||||| ||| ||| |||||||| | |||||||   ||||| |||||| |||||| ||||||||||||||    
T  4299162 gaagcggcagatagatttcacaaagcatctgctattgtttttaatacttatgatgaacttgagagtgatgtaatgaatgctctcta 4299247  T

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Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 526
Target Start/End: Complemental strand, 4561327 - 4561210
Alignment:
Q  409 atcctaatgatttgatgataaagtttattaccgaagtggcggatagatgtcacagagcctcttctattgttatcaatacttcatatgaaattgagattga 508  Q
    |||||||||| |||| |||||  ||||  || |||||||| |||| |||||  ||||| |||  ||| ||  ||||||||||  ||||| |||||| |||    
T  4561327 atcctaatgacttgacgataagatttaacactgaagtggcagataaatgtcttagagcttctggtatggtattcaatacttctaatgaacttgagagtga 4561228  T
Q  509 tgttatgaatgctctcta 526  Q
    ||||||||||||| ||||    
T  4561227 tgttatgaatgctttcta 4561210  T

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Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 328
Target Start/End: Original strand, 4503652 - 4503700
Alignment:
Q  280 ttttgcaattgtaatatgcagatgagagttatctaacaaatggatattt 328  Q
    ||||||||||||  ||| |||||||||||||||||||| ||||| ||||    
T  4503652 ttttgcaattgtgttatacagatgagagttatctaacagatggaaattt 4503700  T

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Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 328
Target Start/End: Complemental strand, 4575257 - 4575209
Alignment:
Q  280 ttttgcaattgtaatatgcagatgagagttatctaacaaatggatattt 328  Q
    |||||||||| | | |||||||||||||| |||||||||||| ||||||    
T  4575257 ttttgcaattatgacatgcagatgagagtgatctaacaaatgaatattt 4575209  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 450 - 526
Target Start/End: Original strand, 20863193 - 20863269
Alignment:
Q  450 gatagatgtcacagagcctcttctattgttatcaatacttcatatgaaattgagattgatgttatgaatgctctcta 526  Q
    ||||||| ||||||||||||| |||||||| |||||||||   ||||  |||||| |||||||||||||| ||||||    
T  20863193 gatagatttcacagagcctctgctattgttttcaatactttcaatgagcttgagagtgatgttatgaatgttctcta 20863269  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 328
Target Start/End: Original strand, 20863039 - 20863074
Alignment:
Q  293 atatgcagatgagagttatctaacaaatggatattt 328  Q
    |||| |||||||||||||||||||||||||||||||    
T  20863039 atatacagatgagagttatctaacaaatggatattt 20863074  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 328
Target Start/End: Complemental strand, 1282050 - 1282018
Alignment:
Q  296 tgcagatgagagttatctaacaaatggatattt 328  Q
    |||||||||||||||||||||||||||||||||    
T  1282050 tgcagatgagagttatctaacaaatggatattt 1282018  T

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Target: scaffold0477 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 3410 - 3505
Alignment:
Q  21 tgccaatgatggtgttattccaccaattacttgcttagtttcggattgttacatgccatttacagttgatgctgctgaaaaacatgcactcccaat 116  Q
    ||||| || |||| || |||||| | |||||||| ||||  | ||||||||||||||||||||  |  | ||||||||| ||||||||||||||||    
T  3410 tgccactgctggtcttgttccacaagttacttgcatagtcgctgattgttacatgccatttaccatacaagctgctgaagaacatgcactcccaat 3505  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 128
Target Start/End: Complemental strand, 3087985 - 3087878
Alignment:
Q  21 tgccaatgatggtgttattccaccaattacttgcttagtttcggattgttacatgccatttacagttgatgctgctgaaaaacatgcactcccaatcatt 120  Q
    |||| ||| |||| ||||||||||| |||||||||||||  | |||| |||||||||||||||  |  | | ||||||| |  |||||||||||||| ||    
T  3087985 tgccgatgctggtcttattccaccagttacttgcttagtagctgatttttacatgccatttaccatacaagttgctgaagagaatgcactcccaatcctt 3087886  T
Q  121 ttcttttc 128  Q
     |||||||    
T  3087885 ctcttttc 3087878  T

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Target: scaffold0288 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 2374 - 2438
Alignment:
Q  53 gcttagtttcggattgttacatgccatttacagttgatgctgctgaaaaacatgcactcccaatc 117  Q
    |||||||||| |||||||||||| |||||||  |  | ||||||||| || ||||||||||||||    
T  2374 gcttagtttctgattgttacatgtcatttaccatacaagctgctgaagaatatgcactcccaatc 2438  T

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