View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20915_high_2 (Length: 584)
Name: NF20915_high_2
Description: NF20915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20915_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 1e-91; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 323 - 560
Target Start/End: Complemental strand, 34261267 - 34261026
Alignment:
| Q |
323 |
aatagtgcatagccattaattttataaaagaa-tacactaaattatcaaactttgacatattcatcaatggttagaaacttatgattacnnnnnnnactc |
421 |
Q |
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| T |
34261267 |
aatagtgcatagccataaattttataaaaaaaatacactaaaatatcaaactttgacatattcatcaatggttagaaacttatgattacttcttttattc |
34261168 |
T |
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| Q |
422 |
tctaaagcaatttgctcgcttttaataggccaattaggatcctct---gtaggccaaattcaataattaggattcttagtcatagttatagctggtcaac |
518 |
Q |
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| T |
34261167 |
tctaaagcaatttgctcacttttaataggccaattaggatcctctaaagtaggccaaattcaataattaggattcttagtcatagttatagctggtcaac |
34261068 |
T |
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| Q |
519 |
aaaatcatgatcacttactcatcgaaatataataccaatcat |
560 |
Q |
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| T |
34261067 |
aaaatcatgatcacttactaatcgaaatataatatcaatcat |
34261026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 62 - 207
Target Start/End: Complemental strand, 34261768 - 34261621
Alignment:
| Q |
62 |
ttttgacgaaacaatcaactaaa---ccttagttagtatctatgaagtacatatacagacatcacaacatgtaagacatagaagtgattgaatgtaacca |
158 |
Q |
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| T |
34261768 |
ttttgacgaaataatcaagtaaattaccttagttactatctatgaagtacatatatagacattacaacatgtcagacatagaagtgattgaatgtaatca |
34261669 |
T |
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| Q |
159 |
catgtaccggcatcatataagtatcagtatcggacattaaaatttgtca |
207 |
Q |
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| T |
34261668 |
catgtgatggcatcatataagtat-agtatcggacattaaaacttgtca |
34261621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 211 - 280
Target Start/End: Complemental strand, 34261658 - 34261590
Alignment:
| Q |
211 |
catcatataaatatcagtatcggacattaaaacttgtcagatactaaacacatcgtcaatcttaaatgtc |
280 |
Q |
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| T |
34261658 |
catcatataagtat-agtatcggacattaaaacttgtcagatactaaacacatcctcaatcttaaatgtc |
34261590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 34261819 - 34261784
Alignment:
| Q |
18 |
attaaatcccctacactaaattcaatcaaataaacc |
53 |
Q |
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| T |
34261819 |
attaaatcccctacactaaattcaatcaagtaaacc |
34261784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 37580618 - 37580678
Alignment:
| Q |
117 |
acatcacaacatgtaagacatagaagtgattgaatgtaaccacatgtaccggcatcatata |
177 |
Q |
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| T |
37580618 |
acatcacaacatgtcagacataaaagagattgaatgtaaccacatgtgtcggcatcatata |
37580678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 226 - 262
Target Start/End: Original strand, 37580692 - 37580728
Alignment:
| Q |
226 |
agtatcggacattaaaacttgtcagatactaaacaca |
262 |
Q |
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| T |
37580692 |
agtatcggacattaaaacatgtcaaatactaaacaca |
37580728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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