View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20915_high_5 (Length: 388)
Name: NF20915_high_5
Description: NF20915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20915_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 19508028 - 19508397
Alignment:
| Q |
1 |
aattaaaagcaccaagaagttcaccaatttccctaacaacttttctcaattgaccaacttcatcattcatcccactactcttttttcccatagtcattct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19508028 |
aattaaaagcaccaagaagttcaccaatttccctaacaacttttctcaattgaccaacttcatcattcatcccactactcttttttcccatagtcattct |
19508127 |
T |
|
| Q |
101 |
agaaatgatgttattagtatgcctaataagttcatgcctcatttcaattggtttaccatttttagatatttccaaaagggtccccataaaacactttatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19508128 |
agaaatgatgttattagtatgcctaataagttcgtgcctcatttcaattggtttaccatttttagatatttccaaaagggtccccataaaacactttatt |
19508227 |
T |
|
| Q |
201 |
tcatcctcacgaatgtgaacaaagtgttcaagagttttcccactaagaagctcagtcatacaaagcttcttaagaaacctccaataatttccataaggta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19508228 |
tcatcctcacgaatgtgaacaaagtgttcaagagttttcccactaagaagctcagtcatacaaagcttcttaagaaacctccaataatttccataaggta |
19508327 |
T |
|
| Q |
301 |
tgaaaaaataatcagcagcaccatatgttaaattctcacttgcaatcataataggtctattggtaaatga |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19508328 |
tgaaaaaataatcagcagcaccatatgttaaattctcacttgcaatcataataggtctattggtaaatga |
19508397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University