View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20915_high_8 (Length: 308)
Name: NF20915_high_8
Description: NF20915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20915_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 20 - 296
Target Start/End: Complemental strand, 17166776 - 17166500
Alignment:
| Q |
20 |
ataatacatgctgcaagtgaattagcttatcttcttggtataacaatggttatcaacagtatttcacaaaccatatcaggttataatttacttgcttttg |
119 |
Q |
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| T |
17166776 |
ataatacatgctgcaagtgaattagcttaccttcttggtatgacaatggttatcaacagtatttcacaaaccatatcaggttataatttacttgcttttg |
17166677 |
T |
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| Q |
120 |
gattagaaaaagtttaatctaagtttaattgcagttttgacccctttattttattagagtaaagaaaatagtctctcgttttcaaaatcgaactttttgg |
219 |
Q |
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| T |
17166676 |
gactagaaaaagtttaatctaagtttaattgcagttttgacccctttattttattagagtaaagaaaatagtctctcgttttcaaaatcgaactttttgg |
17166577 |
T |
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| Q |
220 |
tcatttatataggtgtggtaattggatgtgggtggcaagttatggttggttacataaatttggcatgctattatatt |
296 |
Q |
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| T |
17166576 |
tcatttatataggtgtggtaattggatgtgggtggcaagttatggttggttacataaatttggcatgctattatatt |
17166500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 137
Target Start/End: Complemental strand, 17149127 - 17149013
Alignment:
| Q |
23 |
atacatgctgcaagtgaattagcttatcttcttggtataacaatggttatcaacagtatttcacaaaccatatcaggttataatttacttgctt-ttgga |
121 |
Q |
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| T |
17149127 |
atacatgctgcaagtgaattagcataccttcttggtataaccatggttatcaacagtatctcacaaactatttcaggtgatta-ttacttgcttggttga |
17149029 |
T |
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| Q |
122 |
ttagaaaaagtttaat |
137 |
Q |
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| T |
17149028 |
ctagaaaaagtttaat |
17149013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 17135346 - 17135269
Alignment:
| Q |
23 |
atacatgctgcaagtgaattagcttatcttcttggtataacaatggttatcaacagtatttcacaaaccatatcaggt |
100 |
Q |
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| T |
17135346 |
atacatgctgctagtgaattagcatattttcttggtataaccatggttctcaacagtatttcacaaactatatcaggt |
17135269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 229 - 296
Target Start/End: Complemental strand, 17148823 - 17148756
Alignment:
| Q |
229 |
taggtgtggtaattggatgtgggtggcaagttatggttggttacataaatttggcatgctattatatt |
296 |
Q |
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| T |
17148823 |
taggtgtggtcattggatgtggatggcaagttatggttggttacataaacttggcatgttattatatt |
17148756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 227 - 292
Target Start/End: Complemental strand, 17134965 - 17134900
Alignment:
| Q |
227 |
tataggtgtggtaattggatgtgggtggcaagttatggttggttacataaatttggcatgctatta |
292 |
Q |
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| T |
17134965 |
tataggtgtggtcattggatgtggatggcaagttatggttggttacataaacttgggatgttatta |
17134900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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