View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20915_low_1 (Length: 610)
Name: NF20915_low_1
Description: NF20915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20915_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 542; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 19 - 600
Target Start/End: Original strand, 42183643 - 42184224
Alignment:
| Q |
19 |
ggtggtttcaatctgaggctatcaaataggaacaatactgatccagaggctggtaggtgcaaaagaacagatggtaaaaaatggagatgttctagagatg |
118 |
Q |
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| T |
42183643 |
ggtggtttcaatttgaggctatcaaataggaacaatactgatccagaggctggtaggtgcaaaagaacagatggtaaaaaatggagatgttctaaagatg |
42183742 |
T |
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| Q |
119 |
tagctcctaataacaggtactgtgaaaggcatatgcatagaggtcgtccccgttcaagaaagcctgtggaacttcacacaaataacaatagcaatagtca |
218 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42183743 |
tagctcttaataacaggtattgtgaaaggcatatgcatagaggtcgtccccgttcaagaaagcctgtggaacttcacacaaataacaatagcaatagtca |
42183842 |
T |
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| Q |
219 |
tcatcaaatcaaaaaggctcgttgtgattctaaccctttttctgtgcctgattttactatggctgctcctaatccaactacaagaaaatatggatcttca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
42183843 |
tcatcaaatcaaaaaggctcgttgtgattctaaccctttttctgtgcctgattttactgtggctgttcctaatccaactacaagaaaatatggatcttca |
42183942 |
T |
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| Q |
319 |
tcacattttcttgcttctactccccttcatccttatctccaatcttcccttgctttgcataatagcagctttgagggttcaaataagcaaccaaggtgag |
418 |
Q |
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| T |
42183943 |
tcacattttcttgcttctactccccttcatccttatctccaatcttccctttctttgcataatagcagctttgagggttcaaataagcaaccaaggtgag |
42184042 |
T |
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| Q |
419 |
tttatatctgtcttttgctatatctgtttagaatcacatgttttgattcatatcatatgagtttcatgaaatcaggttgccaatgtgattttgttgaagg |
518 |
Q |
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| T |
42184043 |
tttatatctgtattttgctatatctgtttagaatcacatgttttgattcatatcatatgagtttcatgaaatcaggttgccaatgtgattttgttgaagg |
42184142 |
T |
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| Q |
519 |
cttaagcttcaaagtatagcttttgctaaaatctgtggttcttctaaatttatcatgaatccaaacatgtactatgcctatg |
600 |
Q |
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| T |
42184143 |
cttaagcttctaagtatagcttttgctaaaatctgtgattcttctaaatttatcatgaatccaaacatgtactatgcctatg |
42184224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 70 - 189
Target Start/End: Original strand, 11196783 - 11196902
Alignment:
| Q |
70 |
ggtaggtgcaaaagaacagatggtaaaaaatggagatgttctagagatgtagctcctaataacaggtactgtgaaaggcatatgcatagaggtcgtcccc |
169 |
Q |
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| T |
11196783 |
ggtaggtgtagaagaacagatggtaaaaaatggagatgtgctagggatgctcatcctgattctaagtactgtgaccggcatatgattcgacgtcgttacc |
11196882 |
T |
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| Q |
170 |
gttcaagaaagcctgtggaa |
189 |
Q |
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| T |
11196883 |
gttcaagaaagcctgtggaa |
11196902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 7246602 - 7246546
Alignment:
| Q |
135 |
gtactgtgaaaggcatatgcatagaggtcgtccccgttcaagaaagcctgtggaact |
191 |
Q |
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| T |
7246602 |
gtactgtgaaagacacatgcacagaggtagaaaccgttcaagaaagcctgtggaact |
7246546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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