View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20915_low_10 (Length: 291)
Name: NF20915_low_10
Description: NF20915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20915_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 37806682 - 37806427
Alignment:
| Q |
18 |
aatatttcaaatgatactgtatattaaatttttaatttgacatttttatcatataaagaatcttcaatgaatgaagaaaataattatcattctcaatcaa |
117 |
Q |
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| T |
37806682 |
aatatttcaaatgatactgtatattaaatttttaatttgacatttttattatataaagaatcttcaatgaatgaacaaaataattatcattctcaatcaa |
37806583 |
T |
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| Q |
118 |
gccagagtggcgtaaacataagcaataataagaagtgatgaagcaaaatgaacctatcaaagataaaagcaagaggaatagtgaaagctgatgcaaaagc |
217 |
Q |
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| T |
37806582 |
gccagagtggcgtaaacataagcaataataagaagtgatgaagcaaaatgaacctatcaaagataaaagcaagaggaatagtgaaagctgatgcaaaagc |
37806483 |
T |
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| Q |
218 |
gaggcggtaggcagaagcaaccctcatactcatcccatcatttataacgagcttgt |
273 |
Q |
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| T |
37806482 |
gaggcggtaggcagaagcaaccctcatactcatcccatcatttataacgagcttgt |
37806427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 262
Target Start/End: Complemental strand, 37785849 - 37785756
Alignment:
| Q |
169 |
acctatcaaagataaaagcaagaggaatagtgaaagctgatgcaaaagcgaggcggtaggcagaagcaaccctcatactcatcccatcatttat |
262 |
Q |
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| T |
37785849 |
acctatcaaagataagagcaagaggaatggtgaaagctgatgcaaaagtgagacggtaagcagtggccaccctcatgctcatcccatcatttat |
37785756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 192 - 272
Target Start/End: Complemental strand, 37796468 - 37796388
Alignment:
| Q |
192 |
ggaatagtgaaagctgatgcaaaagcgaggcggtaggcagaagcaaccctcatactcatcccatcatttataacgagcttg |
272 |
Q |
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| T |
37796468 |
ggaatagtgaaagctgatgcacaaatgaggcggtaagcagtcgcaaccctcatactcatcccatcatttataacgagcttg |
37796388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 273
Target Start/End: Complemental strand, 37778737 - 37778621
Alignment:
| Q |
157 |
gaagcaaaatgaacctatcaaagataaaagcaagaggaatagtgaaagctgatgcaaaagcgaggcggtaggcagaagcaaccctcatactcatcccatc |
256 |
Q |
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||||||||||| ||||||||||| || |||||| |||| ||||||||| | ||||||| ||||||||| || | || |||||||| ||||| ||||| |
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| T |
37778737 |
gaagcaaaatggacctatcaaagtaaacagcaaggggaacagtgaaagccgctgcaaaactgaggcggtaagcggtggccaccctcatgctcattccatc |
37778638 |
T |
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| Q |
257 |
atttataacgagcttgt |
273 |
Q |
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| T |
37778637 |
gtttatgacgagcttgt |
37778621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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