View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20915_low_3 (Length: 580)
Name: NF20915_low_3
Description: NF20915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20915_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 89 - 554
Target Start/End: Original strand, 44090511 - 44090978
Alignment:
| Q |
89 |
aaataagtagtatttgnnnnnnngaatctagatattctaaaataaaattaatatattataaccaaaccaacgtgttttcatcggcttggtttggttcaga |
188 |
Q |
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| T |
44090511 |
aaataagtagtatttgaaaaaaagaatctagatattctaaaataaaattaatatattataaccaaaccaacgtgttttcatcggcttggtttggttcaga |
44090610 |
T |
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| Q |
189 |
tcatggaaaaaatattataaaaaccaaaccaaac-----aaactatctataaatagttcagnnnnnnnnnctcctaaaattcaaaccaagtcaacttatt |
283 |
Q |
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| T |
44090611 |
tcatggaaaaaatattataaaaaccaaaccaaaccaaacaaactatctataaatagttcagtttttttttctcctaaaattcaaaccaagtcaacttatt |
44090710 |
T |
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| Q |
284 |
acatccctaattctcataatcctcatgagaattgatgtttatgacaaatttattttacttttcctttcttctttgaatctttttatagtctgactatctt |
383 |
Q |
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| T |
44090711 |
acatctctaattctcagagtcctcataagaattgatgtttatgacaaatttattttacttatcctttct---ttgaatctttttatagtctgactatctt |
44090807 |
T |
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| Q |
384 |
tgttcatataccattagagttaaacggaccctctcagcaccacctaggctcaaatgtccaattatatttcactgtaaacatgcacaaatataaatattct |
483 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44090808 |
tgttcatataccattagagttaaacggaccctctcaacaccacctaggctcaaatgtccaattatatttcactgtaaacatgcacaaatataaatattct |
44090907 |
T |
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| Q |
484 |
ccattaatgaaaaaagtatttttcatttatcgcagggtgtggcggtccatgcagaggcggatctctttaga |
554 |
Q |
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| T |
44090908 |
ccattaatgaaaaaagtatttttcatttatcgcagggtgtggcggtccatgcagaggcagatctctttaga |
44090978 |
T |
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