View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20915_low_4 (Length: 393)
Name: NF20915_low_4
Description: NF20915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20915_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 6 - 376
Target Start/End: Complemental strand, 3682957 - 3682587
Alignment:
| Q |
6 |
accaagatgctttcatttacttcactctcatagtagaaaaatcctcgtataatcatattgttttaaatttatgagcatgtcgacaaagaattaaacataa |
105 |
Q |
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| T |
3682957 |
accaagatgctttcatttacttcacactcatagtagaaaaatcctcgtataatcatattgttttaaatttatgagcatgtcgacaaagaattaaacataa |
3682858 |
T |
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| Q |
106 |
aacaatgtttcatattaactagtgttggactgcatcatattcttctatggnnnnnnntgtaagacaaaagagaaaatagaccaaatccagtgcaaaagat |
205 |
Q |
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| T |
3682857 |
aacaatgtttcatattaactagtgttggactgcatcatattcttctatggaaaaacatgtaagacaaaagagaaaatagaccaaatccagtgcaaaagat |
3682758 |
T |
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| Q |
206 |
tataattaacaaccaaatactacacatgcgtttagaaaacccaacgacaaaacatcaatttaagctccacactcacattaaaagtaaacttttcaacaaa |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
3682757 |
tataattaacaaccaaatactacacatgcgtttagaaaacccaacgacaaaacatcaatttaagctccacactcacataaaaagtatacttttcaacaaa |
3682658 |
T |
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| Q |
306 |
gataaaacactctttaatttatgacaagcaaagctctaaaaagattaaaccttaaagaagacaatgagatc |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3682657 |
gataaaacactctttaatttatgacaagcaaagctctaaaaagattaaaccttaaagaaaacaatgagatc |
3682587 |
T |
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