View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20915_low_6 (Length: 359)
Name: NF20915_low_6
Description: NF20915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20915_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 64 - 335
Target Start/End: Complemental strand, 30750805 - 30750534
Alignment:
| Q |
64 |
tatcactgtatatcgtatactaataaagcataatcaagctacttcaaggagatatggagaaatttatttcaaaccggtcaagcattaaatccgtgcctga |
163 |
Q |
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||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||| |
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| T |
30750805 |
tatcactgtgtattgtatactaataaagcataatcaagctacttcaaggagatatggagaaatttgtttcaaaccggtcaagcatcaaatctgtgcctga |
30750706 |
T |
|
| Q |
164 |
ggactatgtattcccacaagaaacaagaccagggaatttcaaaatcccaatcaacaaaaccatcccaataattgatcttagtgaagcacaaaatggggat |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30750705 |
ggactatgtattcccacaagaaacaagaccagggaatttcaaaatcccaatcaacaaaaccatcccaataattgatcttagtgaagcacaaaatggtgat |
30750606 |
T |
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| Q |
264 |
agaaccaaaacaatacaacaaattatcaaggcttctgaggaatttggattctttcaggtattcatactaaat |
335 |
Q |
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|||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
30750605 |
agaaccaaaacaattcaacaaattatcaaggctgctgaggagtttggattctttcaggtattcatactaaat |
30750534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 64 - 335
Target Start/End: Complemental strand, 30752616 - 30752345
Alignment:
| Q |
64 |
tatcactgtatatcgtatactaataaagcataatcaagctacttcaaggagatatggagaaatttatttcaaaccggtcaagcattaaatccgtgcctga |
163 |
Q |
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||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||| |
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| T |
30752616 |
tatcactgtgtattgtatactaataaagcataatcaagctacttcaaggagatatggagaaatttgtttcaaaccggtcaagcatcaaatctgtgcctga |
30752517 |
T |
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| Q |
164 |
ggactatgtattcccacaagaaacaagaccagggaatttcaaaatcccaatcaacaaaaccatcccaataattgatcttagtgaagcacaaaatggggat |
263 |
Q |
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| T |
30752516 |
ggactatgtattcccacaagaaacaagaccagggaatttcaaaatcccaatcaacaaaaccatcccaataattgatcttagtgaagcacaaaatggtgat |
30752417 |
T |
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| Q |
264 |
agaaccaaaacaatacaacaaattatcaaggcttctgaggaatttggattctttcaggtattcatactaaat |
335 |
Q |
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| T |
30752416 |
agaaccaaaacaattcaacaaattatcaaggctgctgaggagtttggattctttcaggtattcatactaaat |
30752345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 119 - 341
Target Start/End: Complemental strand, 30762895 - 30762673
Alignment:
| Q |
119 |
ggagaaatttatttcaaaccggtcaagcattaaatccgtgcctgaggactatgtattcccacaagaaacaagaccagggaatttcaaaatcccaatcaac |
218 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30762895 |
ggagaaatttatttcaaaccggtcaagcatcaaatctgtgcctgaggactatgtattcccacaagaaacaagaccagggaatttcaaaatcccaattaac |
30762796 |
T |
|
| Q |
219 |
aaaaccatcccaataattgatcttagtgaagcacaaaatggggatagaaccaaaacaatacaacaaattatcaaggcttctgaggaatttggattctttc |
318 |
Q |
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| T |
30762795 |
aaaaccatcccaacaattgatcttagtgaagcacaaaatggggatagaaccaaaacaatacaacaaattatcaaggcttctgaggagtttggattctttc |
30762696 |
T |
|
| Q |
319 |
aggtattcatactaaatactctt |
341 |
Q |
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||||||||||||||||||||||| |
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| T |
30762695 |
aggtattcatactaaatactctt |
30762673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 30771912 - 30771745
Alignment:
| Q |
1 |
gcaacgtgattcattgttcttctccatcataaaatacatcctctccccagttttagccattactatcactgtatatcgtatactaataaagcataatcaa |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
30771912 |
gcaacgtgattcattgttcttctccatcataaa-tacatcctctccccagttttagccattactatcactctatattgtatactaataaagcataatcaa |
30771814 |
T |
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| Q |
101 |
gctacttcaaggagatatggagaaatttatttcaaaccggtcaagcattaaatccgtgcctgaggacta |
169 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
30771813 |
gctacttcaaggagatatggagaaatttatttcaaaccggtcaagcatcaaatctgtgcctgaggacta |
30771745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 114 - 335
Target Start/End: Complemental strand, 30742265 - 30742043
Alignment:
| Q |
114 |
gatatggagaaatttatttcaaaccggtcaagcattaaatccgtgcctgaggactatgtattcccacaagaaacaagaccagggaa---tttcaaaatcc |
210 |
Q |
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|||||||||||| ||||||||||| |||||| | |||| ||||||||| |||| |||||||| ||||||||| |||||| | | |||| |||| |
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| T |
30742265 |
gatatggagaaacttatttcaaactggtcaaatgtccaatctgtgcctgagaactacatattcccattagaaacaaggccaggggaggatctcaatatcc |
30742166 |
T |
|
| Q |
211 |
caatcaacaaaaccatcccaataattgatcttagtgaagcacaaaatggggatagaaccaaaacaatacaacaaattatcaaggcttctgaggaatttgg |
310 |
Q |
| |
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|| ||||||| | |||||||||||||||||| | |||||| ||||| || |||||| | ||||| |||||||||||||||||| || |||| ||||| |
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| T |
30742165 |
cagtcaacaacaacatcccaataattgatctcaatgaagctcaaaacggtgatagagatcacacaattcaacaaattatcaaggctgctcaggagtttgg |
30742066 |
T |
|
| Q |
311 |
attctttcaggtattcatactaaat |
335 |
Q |
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||||||||||| |||||||||||| |
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| T |
30742065 |
attctttcagg--ttcatactaaat |
30742043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 172 - 322
Target Start/End: Complemental strand, 30809422 - 30809272
Alignment:
| Q |
172 |
tattcccacaagaaacaagaccagggaatttcaaaatcccaatcaacaaaaccatcccaataattgatcttagtgaagcacaaaatggggatagaaccaa |
271 |
Q |
| |
|
|||| |||| |||| |||||||||| ||||||||||||||| |||| | | ||| ||| | ||||||||||||||||||||||| || |||||||| || |
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| T |
30809422 |
tatttccaccagaatcaagaccaggaaatttcaaaatcccattcaatagtagcattccagtgattgatcttagtgaagcacaaaagggtgatagaactaa |
30809323 |
T |
|
| Q |
272 |
aacaatacaacaaattatcaaggcttctgaggaatttggattctttcaggt |
322 |
Q |
| |
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| ||| || |||| ||||| ||||||||||| ||||||||||||||||| |
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| T |
30809322 |
tataattcagaaaatgatcaaagcttctgaggagtttggattctttcaggt |
30809272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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