View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20915_low_7 (Length: 316)
Name: NF20915_low_7
Description: NF20915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20915_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 9 - 300
Target Start/End: Original strand, 21592490 - 21592781
Alignment:
| Q |
9 |
gtgaagagttatcaaaatcaaacaatgtacttccttcctctctatcataccatgcttgatctgcactgtattccatctcttgacgcatgctttcagtaat |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
21592490 |
gtgaagagttatcaaaatcaaacaatgtacttccttcctctctatcataccatgctcggtctgcactgtattccatctcttgacgcatgctttcagtaat |
21592589 |
T |
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| Q |
109 |
ctcatacttatgttcttcacccaagtcagatttatttgctatttcctcctcatctgaagaaaaagcgagtttatgcaatcttcgattatatccagcaaca |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21592590 |
ctcatacttatgttcttcacccaagtcagatttatttgctatttcctcctcatctgaagaaaaagcgagtttatgcaatcttcgattatatccagcaaca |
21592689 |
T |
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| Q |
209 |
gaagatttgcgtgaagagccagaagcccgtattggaaaaggagacggagaaacatgatccaaaggagaaagtgaattaaaggacgaacaagg |
300 |
Q |
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| T |
21592690 |
gaagatttgtgtgaagagccagaagcccgtattggaaaaggagacggagaaacatgatccaaaggagaaagtgaattaaaggacgaacaagg |
21592781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 54 - 158
Target Start/End: Complemental strand, 42095475 - 42095371
Alignment:
| Q |
54 |
cataccatgcttgatctgcactgtattccatctcttgacgcatgctttcagtaatctcatacttatgttcttcacccaagtcagatttatttgctatttc |
153 |
Q |
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||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
42095475 |
cataccatgctcggtctgcatcatattccatctcttgacgcatgctttcagtaatctcatacttgtgttcttcacccaagtcagatttatctgctatttc |
42095376 |
T |
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| Q |
154 |
ctcct |
158 |
Q |
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| T |
42095375 |
ctcct |
42095371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 161 - 286
Target Start/End: Complemental strand, 42095259 - 42095134
Alignment:
| Q |
161 |
tctgaagaaaaagcgagtttatgcaatcttcgattatatccagcaacagaagatttgcgtgaagagccagaagcccgtattggaaaaggagacggagaaa |
260 |
Q |
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||||||||||| || ||||||||| | |||||||||||||||| ||||||||||||| ||||||||| ||||| |||||||||| |||||||||||||| |
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| T |
42095259 |
tctgaagaaaaggcaagtttatgcgaccttcgattatatccagaaacagaagatttgactgaagagccggaagctcgtattggaacaggagacggagaaa |
42095160 |
T |
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| Q |
261 |
catgatccaaaggagaaagtgaatta |
286 |
Q |
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|||| ||| |||||||| |||||||| |
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| T |
42095159 |
catggtcccaaggagaaggtgaatta |
42095134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 42095624 - 42095574
Alignment:
| Q |
9 |
gtgaagagttatcaaaatcaaacaatgtacttccttcctctctatcatacc |
59 |
Q |
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|||||||| ||||| |||||||||||| || ||||||||||||||||||| |
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| T |
42095624 |
gtgaagagctatcagaatcaaacaatgcgctgccttcctctctatcatacc |
42095574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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