View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20916_high_4 (Length: 357)
Name: NF20916_high_4
Description: NF20916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20916_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 124 - 327
Target Start/End: Original strand, 29788188 - 29788391
Alignment:
| Q |
124 |
gaaataaataggtaaattcaagagatatatgaagtgatggtgcaagaaagtggtaaagacttcaatcaatggagacttgttaaccaagttaaactatgga |
223 |
Q |
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| T |
29788188 |
gaaataaataggtaaattcaagagatatatgaagtaatggtgcaagaaagtggtaaagacttcaatcaatggagacttgttaaccaagttaaatgatgga |
29788287 |
T |
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| Q |
224 |
gcaatcaatacttatttcaatggccaagtagcggacaatcattcaaaaaaccttcaaattttatggattaaagactcaaaaccgtcaccaaggaatccaa |
323 |
Q |
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| T |
29788288 |
gcaatcaatactcatttcaatggccaagtagcggacaatcattcaaaaaaccttcaaattttatggattaaagactcaaaaccgtcaccaaggaatccaa |
29788387 |
T |
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| Q |
324 |
agac |
327 |
Q |
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|||| |
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| T |
29788388 |
agac |
29788391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 285
Target Start/End: Original strand, 32700829 - 32700988
Alignment:
| Q |
126 |
aataaataggtaaattcaagagatatatgaagtgatggtgcaagaaagtggtaaagacttcaatcaatggagacttgttaaccaagttaaactatggagc |
225 |
Q |
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||||||||||||||| ||||||||||||||||| | |||||| || || |||||| ||||| || ||||||||| |||||||| || |||||||| |
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| T |
32700829 |
aataaataggtaaatacaagagatatatgaagtaaatgtgcaaaaagatgataaagatttcaaagaacggagacttgccaaccaagtcaagttatggagc |
32700928 |
T |
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| Q |
226 |
aatcaatacttatttcaatggccaagtagcggacaatcattcaaaaaaccttcaaatttt |
285 |
Q |
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| T |
32700929 |
aatcaagacccatttcaatggccaaatagtggataatcactcggaaacacttcaaatttt |
32700988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 182 - 304
Target Start/End: Complemental strand, 31988089 - 31987967
Alignment:
| Q |
182 |
acttcaatcaatggagacttgttaaccaagttaaactatggagcaatcaatacttatttcaatggccaagtagcggacaatcattcaaaaaaccttcaaa |
281 |
Q |
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||||||||||||| ||| ||||| |||||| || |||| ||||||||| ||| |||||||||||||| || || ||||||| || ||||| ||||| |
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| T |
31988089 |
acttcaatcaatgaagaattgttgaccaagacaagttatgaagcaatcaagactcatttcaatggccaaataatgggcaatcatccagcaaaccatcaaa |
31987990 |
T |
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| Q |
282 |
ttttatggattaaagactcaaaa |
304 |
Q |
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||| |||||||||| || ||||| |
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| T |
31987989 |
tttcatggattaaacacccaaaa |
31987967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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