View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20916_high_6 (Length: 339)
Name: NF20916_high_6
Description: NF20916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20916_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 15 - 322
Target Start/End: Original strand, 40656400 - 40656707
Alignment:
| Q |
15 |
gagatccattccttataatgcgtcaagtgtgcagaccacattttccttcaaactacaagataagaagggtagattacatagattcacatgtggtaggtca |
114 |
Q |
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| T |
40656400 |
gagatccattccttataatgcgtcaagtgtgcagaccacattttccttcaaactacaagataagaagggtagattacatagattcacatgtggtaggtca |
40656499 |
T |
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| Q |
115 |
accattatatgttaccattcatagattacatttattttcttctataatnnnnnnntaaagaaataatggatctcgtgtaatctgtacttttaaattatat |
214 |
Q |
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| T |
40656500 |
accattatatgttaccattcatagattacatttattttcttctataataaaaaaataaagaaataatggatctcgtgtaatctatacttgtaaattatat |
40656599 |
T |
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| Q |
215 |
ttaagttaattacgtgcaaagtaaaatattgtcagttgagtggtttctgtgttttcttgcaacttcagatactcggagcttgtcagagattataacttcc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40656600 |
ttaagttaattacgtgcaaagtaaaatattgtcagttgagtggtttctgtgttttcttgcaacttcagatactcggagcttgtcagagattataacttcc |
40656699 |
T |
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| Q |
315 |
atcattca |
322 |
Q |
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|||||||| |
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| T |
40656700 |
atcattca |
40656707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 45432485 - 45432542
Alignment:
| Q |
52 |
acattttccttcaaactacaagataagaagggtagattacatagattcacatgtggta |
109 |
Q |
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| T |
45432485 |
acattttccttcaaagtacaagataaaaagggcagaatgcatagattcacatgtggta |
45432542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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