View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20916_high_7 (Length: 333)
Name: NF20916_high_7
Description: NF20916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20916_high_7 |
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| [»] scaffold0173 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 11 - 314
Target Start/End: Original strand, 34285489 - 34285796
Alignment:
| Q |
11 |
ttatactcctaatctgtgtgtttgcctctcttgtagctttgatgagttaggcacactgttgggaatcccacctcccaaggtataaattttcatgtcttca |
110 |
Q |
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| T |
34285489 |
ttatactcctaatctgtgtgtttgcctctcttgtagctttgatgagttaggcacactgttgggaatcccacctcccaaggtataaattttcatgtcttca |
34285588 |
T |
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| Q |
111 |
gtgaagagaagtacatcttatagaaagaacaaatctgtcaattgaattcagcattttgtatttctaatttatattcc----ttatttgtttttgagggaa |
206 |
Q |
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| T |
34285589 |
gtgaagagaagtacatcttatagaaagaacaaatctgtcaattgaattcagcattttgtatttctaatttatattccttaattatttgtttttgagggaa |
34285688 |
T |
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| Q |
207 |
gctttatttaaattaatcatcagatttaagtaagaaaaaataataattgaaaggtgtggcatggcgataatagcttttatttaaattaatgttctggagt |
306 |
Q |
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| T |
34285689 |
gctttatttaaattaatcatcagatttaagtaagaaaaaataataattgaaaggtgtggcatggcgataatagcttttatttaaattaatgttctggagt |
34285788 |
T |
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| Q |
307 |
agggaaac |
314 |
Q |
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| T |
34285789 |
agggaaac |
34285796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0173 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: scaffold0173
Description:
Target: scaffold0173; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 11 - 206
Target Start/End: Original strand, 13210 - 13420
Alignment:
| Q |
11 |
ttatactcctaatctgtgtgtttgcctctcttgtagctttgatgagttaggcacactgttgggaatcccacctcccaaggt-ataaattttcatgtc--- |
106 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | ||||||||| |
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| T |
13210 |
ttatgctcctaatctgtgtgtttgcctctcttgtagctttgatgagttaggcacactgttgggaatcccacctcccaaggtaacataatttcatgtccaa |
13309 |
T |
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| Q |
107 |
--------------ttcagtgaagagaagtacatcttatagaaagaacaaatctgtcaattgaattcagcattttgtatttctaatttatattccttatt |
192 |
Q |
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| T |
13310 |
agtcatacttatttttcagtgaagagaagtacatcttatagaaagaacaa--ctgttaattgaattcagc-tttcgtatttctaatatatattccttatt |
13406 |
T |
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| Q |
193 |
tgtttttgagggaa |
206 |
Q |
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| T |
13407 |
tgtttttgagggaa |
13420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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