View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20916_low_1 (Length: 608)
Name: NF20916_low_1
Description: NF20916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20916_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 19 - 600
Target Start/End: Original strand, 43560571 - 43561149
Alignment:
| Q |
19 |
tatccatctcaatctacaactctttccacatctttgaagtcctgaagaaattcatcaaccatgttagactcttagttttgaagaatgtaacatgatttta |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43560571 |
tatccatctcaatctacaactctttccacatctttgaagtcctgaagaaattcatcaaccatgttagactcttagttttgaagaatgtaacatgatttta |
43560670 |
T |
|
| Q |
119 |
acaaattacttaccagcttgtttaggaacagaactccagcaaccaacaccaaatctagttatatgattgaaaagcttttcatcttcttcaggggaccata |
218 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43560671 |
acaa-ttacttaccagcttgtttaggaacagaactccagcaaccaacaccaaatctagttatatgattgaaaagcttttcatcttcttcaggggaccata |
43560769 |
T |
|
| Q |
219 |
aacctttcctcaacttttgctttaaacaacatgaatgacgacccatttggatttgtatgagaaatgttaagttggttttggaggaagaagaatagtgtga |
318 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43560770 |
aacctttcctcaacttttgctttaaacaacatgaatgacgacccatttggatttgtatgagaaatgttaagttggttttggaggaagaagaatagtgtga |
43560869 |
T |
|
| Q |
319 |
agtatgaagtggtcactgtctctatatagcgtgaaatattacctgagtgagtgtttgtgtcatttaaacgttttcaaaagtggtggtagaaaaatattgt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43560870 |
agtatgaagtggtcactgtctctatatagcgtgaaatattacctgagtgagtgtttgtgtcatttaaacgttttcaaaagtggtggtagaaaaatattgt |
43560969 |
T |
|
| Q |
419 |
tatgttgtgtgtggggtgaagagggagagtaactcaaactaattgtgttcatttaannnnnnnnnnnnnnnnnnncctaaatcattaatcatacttagga |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
43560970 |
tatgttgtgtgtggggtgaagagggagagtaactcaaactaattgtgttcatttaaagagagaaagagagagagacctaaatcattaatcatacttagga |
43561069 |
T |
|
| Q |
519 |
ttgaagttannnnnnnnnnnnnnnnnnnnnacattgagaggaaggtgctgcaatcaagtgggttttacgcaattcctatgct |
600 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43561070 |
ttgaagtta--agagagagagaaagagagaacattgagaggaaggtgctgcaatcaagtgggttttacgcaattcctatgct |
43561149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 5e-33; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 128 - 260
Target Start/End: Complemental strand, 51044227 - 51044095
Alignment:
| Q |
128 |
ttaccagcttgtttaggaacagaactccagcaaccaacaccaaatctagttatatgattgaaaagcttttcatcttcttcaggggaccataaacctttcc |
227 |
Q |
| |
|
||||||||| |||||||||| |||||||| || ||||||||||| | ||||| | |||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
51044227 |
ttaccagctagtttaggaactgaactccaacatccaacaccaaacatggttatgtaattgaaaagcttatcatcttcttcaggggaccataaaccttttc |
51044128 |
T |
|
| Q |
228 |
tcaacttttgctttaaacaacatgaatgacgac |
260 |
Q |
| |
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| | |||||||||||| ||||||||||||||| |
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|
| T |
51044127 |
ttagtttttgctttaaagaacatgaatgacgac |
51044095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 16127430 - 16127462
Alignment:
| Q |
20 |
atccatctcaatctacaactctttccacatctt |
52 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
16127430 |
atccatctcaatctacaactctttccacatctt |
16127462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 16138940 - 16138972
Alignment:
| Q |
20 |
atccatctcaatctacaactctttccacatctt |
52 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
16138940 |
atccatctcaatctacaactctttccacatctt |
16138972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 128 - 264
Target Start/End: Original strand, 34626858 - 34626994
Alignment:
| Q |
128 |
ttaccagcttgtttaggaacagaactccagcaaccaacaccaaatctagttatatgattgaaaagcttttcatcttcttcaggggaccataaacctttcc |
227 |
Q |
| |
|
||||||||| ||||||||| |||||||| || || |||||||| | ||||| | |||||||||||| ||||||||||||||||||||||||||||| | |
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|
| T |
34626858 |
ttaccagctaatttaggaactgaactccaacatccgacaccaaacatggttatgtaattgaaaagcttctcatcttcttcaggggaccataaaccttttc |
34626957 |
T |
|
| Q |
228 |
tcaacttttgctttaaacaacatgaatgacgacccat |
264 |
Q |
| |
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| | |||||||||||| |||| |||| |||||||| |
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|
| T |
34626958 |
ttagtttttgctttaaagaacaaaaatggcgacccat |
34626994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 34626724 - 34626758
Alignment:
| Q |
20 |
atccatctcaatctacaactctttccacatctttg |
54 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
34626724 |
atccatctcaatctacaactctttccacatctttg |
34626758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 2590878 - 2590833
Alignment:
| Q |
19 |
tatccatctcaatctacaactctttccacatctttgaagtcctgaa |
64 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| |||||||| |||||| |
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| T |
2590878 |
tatccatctcaacctacaactcttaccacacctttgaagccctgaa |
2590833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 5960412 - 5960444
Alignment:
| Q |
19 |
tatccatctcaatctacaactctttccacatct |
51 |
Q |
| |
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||||||||| ||||||||||||||||||||||| |
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|
| T |
5960412 |
tatccatcttaatctacaactctttccacatct |
5960444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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