View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20916_low_3 (Length: 399)
Name: NF20916_low_3
Description: NF20916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20916_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 173 - 377
Target Start/End: Original strand, 1255233 - 1255442
Alignment:
| Q |
173 |
aaatctgttaccatgaactctgaatctttttgacacttttcctatgtactaatgtttattttgcatcagtccacattgaaatatttatatattaatcatt |
272 |
Q |
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| T |
1255233 |
aaatctgttaccatgaactctgaatctttttgacacttttcctatgtactaatgtttattttgcatcagtccacattgaaatatttatatattaatcatt |
1255332 |
T |
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| Q |
273 |
aagttaacctgtatgatttattggacaaaaacaatatgaagatttgttccaaaaattgtcacaa-----aaagcacaaacacttctaggactagttgtgt |
367 |
Q |
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| T |
1255333 |
aagttaacctatatgatttattggacaaaaaccatatgaagatttgttccaaaaattgtcacaaactgtaaagcacaaacacctttaggactagttgtgc |
1255432 |
T |
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| Q |
368 |
cacggtgtcc |
377 |
Q |
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|||||||||| |
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| T |
1255433 |
cacggtgtcc |
1255442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 1253450 - 1253612
Alignment:
| Q |
18 |
aaaactgtggcattagaattgaacaatctcttt--tacaaacttcaatttctgataaaacactttctcacatatcaaagcactactcagaaacatttgat |
115 |
Q |
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| T |
1253450 |
aaaactgtggcattagaattgaacaatctttttgttacaaacttcaatttctgataaaacactttctcacatatcaaagcactactcagaaacatttgat |
1253549 |
T |
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| Q |
116 |
attgctgctcttttgtgtgtagtatacttgttcttgcgtagcttcagcatattcagtaaatctgt |
180 |
Q |
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| T |
1253550 |
attgctg--cttttgtgtgtagtatacttgttcttgcgtagcttcagcatattcagtaaatctgt |
1253612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 158
Target Start/End: Original strand, 44882954 - 44882984
Alignment:
| Q |
128 |
ttgtgtgtagtatacttgttcttgcgtagct |
158 |
Q |
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| T |
44882954 |
ttgtgtgtagtatacttgttcttgcgtagct |
44882984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 253
Target Start/End: Original strand, 44897618 - 44897706
Alignment:
| Q |
167 |
ttcagtaaatctgttaccatgaactctg--aatctttttgacacttttcctatgtactaatgtttattttgcatcagtccacattgaaa |
253 |
Q |
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| T |
44897618 |
ttcattaaatctgttatcgtgaactttgtgaagctttttgacactttccctacgtactaatgtgtttttgacttcagtccacattgaaa |
44897706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 381
Target Start/End: Original strand, 23219607 - 23219651
Alignment:
| Q |
337 |
aaagcacaaacacttctaggactagttgtgtcacggtgtccgaca |
381 |
Q |
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| T |
23219607 |
aaagcacaaacacttctcggattaggtgtgtcacggtgtcggaca |
23219651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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