View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20916_low_5 (Length: 347)

Name: NF20916_low_5
Description: NF20916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20916_low_5
NF20916_low_5
[»] chr6 (3 HSPs)
chr6 (18-335)||(33050851-33051168)
chr6 (227-335)||(33032816-33032926)
chr6 (19-73)||(33032515-33032569)
[»] chr4 (2 HSPs)
chr4 (254-335)||(8264038-8264119)
chr4 (254-335)||(8277456-8277537)
[»] chr1 (2 HSPs)
chr1 (19-74)||(38903932-38903987)
chr1 (275-335)||(9901039-9901098)
[»] chr8 (1 HSPs)
chr8 (19-61)||(43522065-43522107)
[»] chr7 (1 HSPs)
chr7 (260-335)||(7975171-7975245)
[»] chr5 (1 HSPs)
chr5 (260-335)||(13838165-13838239)
[»] chr3 (1 HSPs)
chr3 (260-335)||(1293818-1293892)
[»] chr2 (1 HSPs)
chr2 (260-335)||(26543722-26543796)


Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 335
Target Start/End: Original strand, 33050851 - 33051168
Alignment:
Q  18 agcttgagagttaatgctgctctatccttccttggatgcctgaggtcaaattattcttctgtaattttaccaatgtttcttaggtatatccaagttggat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33050851 agcttgagagttaatgctgctctatccttccttggatgcctgaggtcaaattattcttctgtaattttaccaatgtttcttaggtatatccaagttggat 33050950  T
Q  118 ttaatttagtgtctttatgtttcaaatttatcattgttggttcaaacttgtgtgttatgtacggtgtatcaatgttgcattgtcctatagttttttctca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33050951 ttaatttagtgtctttatgtttcaaatttatcattgttggttcaaacttgtgtgttatgtacggtgtatcaatgttgcattgtcctatagttttttctca 33051050  T
Q  218 gattttttctcaattacatgttactttgaaatgtattttatgggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataat 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33051051 gattttttctcaattacatgttactttgaaatgtattttatgggctgtgatgagtcatagagatagtcatgcaccactctcatgtttcaatgctgataat 33051150  T
Q  318 tttctcatacccaatatt 335  Q
    ||||||||||||||||||    
T  33051151 tttctcatacccaatatt 33051168  T

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Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 227 - 335
Target Start/End: Original strand, 33032816 - 33032926
Alignment:
Q  227 tcaattacatgttactttgaaat--gtattttatgggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctca 324  Q
    |||||||||| ||||| |||| |  ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  33032816 tcaattacatattactctgaattttgtattttattggctatgatgagtcatagagatagtcatgcaccactctgatgtttccgtgctgataattttctca 33032915  T
Q  325 tacccaatatt 335  Q
    |||||| ||||    
T  33032916 tacccattatt 33032926  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 33032515 - 33032569
Alignment:
Q  19 gcttgagagttaatgctgctctatccttccttggatgcctgaggtcaaattattc 73  Q
    |||||||||||||||||||| |||||||||||||||| |||||||| ||||||||    
T  33032515 gcttgagagttaatgctgctgtatccttccttggatgtctgaggtctaattattc 33032569  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 254 - 335
Target Start/End: Original strand, 8264038 - 8264119
Alignment:
Q  254 tttatgggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatt 335  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||||    
T  8264038 tttatgggctatgatgaatcatagagatagtcatgcaccactctgatattccagtgctgataattttctcatacccattatt 8264119  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 254 - 335
Target Start/End: Original strand, 8277456 - 8277537
Alignment:
Q  254 tttatgggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatt 335  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||||    
T  8277456 tttatgggctatgatgaatcatagagatagtcatgcaccactctgatattccagtgctgataattttctcatacccattatt 8277537  T

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Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 38903932 - 38903987
Alignment:
Q  19 gcttgagagttaatgctgctctatccttccttggatgcctgaggtcaaattattct 74  Q
    |||||||||||||||||||| | |||||||||||||| ||||||||||||||||||    
T  38903932 gcttgagagttaatgctgctatttccttccttggatgtctgaggtcaaattattct 38903987  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 275 - 335
Target Start/End: Complemental strand, 9901098 - 9901039
Alignment:
Q  275 tagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatt 335  Q
    |||||||||||||||||||||||||| || |  ||||||||||||||||||||||| ||||    
T  9901098 tagagatagtcatgcaccactctgat-ttcctgtgctgataattttctcatacccattatt 9901039  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 43522065 - 43522107
Alignment:
Q  19 gcttgagagttaatgctgctctatccttccttggatgcctgag 61  Q
    |||||||||||||||||||| |||||||||||||||| |||||    
T  43522065 gcttgagagttaatgctgctttatccttccttggatgtctgag 43522107  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 335
Target Start/End: Original strand, 7975171 - 7975245
Alignment:
Q  260 ggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatt 335  Q
    |||| |||||| |||||||||||||||||||||||| |||| || |  ||||||||| ||||| ||||||| ||||    
T  7975171 ggctatgatgaatcatagagatagtcatgcaccactttgat-ttcctgtgctgataactttcttatacccattatt 7975245  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 335
Target Start/End: Complemental strand, 13838239 - 13838165
Alignment:
Q  260 ggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatt 335  Q
    |||| |||||| |||||||||||||||||||||||| |||| || |  ||||||||| ||||| ||||||| ||||    
T  13838239 ggctatgatgaatcatagagatagtcatgcaccactttgat-ttcctgtgctgataactttcttatacccattatt 13838165  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 335
Target Start/End: Complemental strand, 1293892 - 1293818
Alignment:
Q  260 ggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatt 335  Q
    |||| |||||| |||||||||||||||||||||||| |||| || |  ||||||||| ||||| ||||||| ||||    
T  1293892 ggctatgatgaatcatagagatagtcatgcaccactttgat-ttcctgtgctgataactttcttatacccattatt 1293818  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 335
Target Start/End: Complemental strand, 26543796 - 26543722
Alignment:
Q  260 ggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatt 335  Q
    |||| |||||| |||||||||||||||||||||||| |||| || |  ||||||||| ||||| ||||||| ||||    
T  26543796 ggctatgatgaatcatagagatagtcatgcaccactttgat-ttcctgtgctgataactttcttatacccattatt 26543722  T

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