View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20916_low_8 (Length: 297)
Name: NF20916_low_8
Description: NF20916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20916_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 279600 - 279894
Alignment:
| Q |
1 |
gaatacaacaggtcatattctttatttatttattaatggattttttacgggtacacaacatggt------------------tttatacatgaagggaac |
82 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
279600 |
gaatacaacaggtcatattctttatttatttattaatggatttttgacgggtacacaacatggtaccgttagtcaacctggttttatacatgaagggaac |
279699 |
T |
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| Q |
83 |
atctctttaaatcaaggtaccaatattataagtttattaagtgttacagttggtcatgcaaattacggtgcgttctttgatatgcaagaaactggcattg |
182 |
Q |
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| T |
279700 |
atctctttaaatcaaggtaccaatattataagtttattaagtgttacagtaggtcatgcaaattacggtgcgttctttgatatgcaagaaactggcattg |
279799 |
T |
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| Q |
183 |
ttgggggtcctgtaaaactcttttcaatcgaaaatccaaacaatgttttggatttatcaaaatctacttggtcgtacaaagttgggataaatggt |
277 |
Q |
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| T |
279800 |
ttgggggtcctgtaaaactcttttcaatcgaaaatccaaacaatgttttggatttatcaaaatctacttggtcgtacaaagttgggataaatggt |
279894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 86 - 277
Target Start/End: Original strand, 290148 - 290339
Alignment:
| Q |
86 |
tctttaaatcaaggtaccaatattataagtttattaagtgttacagttggtcatgcaaattacggtgcgttctttgatatgcaagaaactggcattgttg |
185 |
Q |
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| T |
290148 |
tctttgaaacaaggtgccaatattataagtttgttaagtgttacacttggcaaatcaaattgtagtgggtacattgatatgaaagaaactggtattgttg |
290247 |
T |
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| Q |
186 |
ggggtcctgtaaaactcttttcaatcgaaaatccaaacaatgttttggatttatcaaaatctacttggtcgtacaaagttgggataaatggt |
277 |
Q |
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| T |
290248 |
gcggtcctgcgaaactcatttcaactgaatatccaaacaatgttttggatttatcaaaatctacttggtcatacaaagttgggatgaatggt |
290339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 97 - 277
Target Start/End: Original strand, 24531886 - 24532066
Alignment:
| Q |
97 |
aggtaccaatattataagtttattaagtgttacagttggtcatgcaaattacggtgcgttctttgatatgcaagaaactggcattgttgggggtcctgta |
196 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| | |||||| ||| |||| |||||||| |||||||||| ||||||||||||| ||| |
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| T |
24531886 |
aggtaccaatattataagtttattaagtgttacacttggtaaatcaaattgtagtgggttcattgatatgaaagaaactggtattgttgggggtcatgtt |
24531985 |
T |
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| Q |
197 |
aaactcttttcaatcgaaaatccaaacaatgttttggatttatcaaaatctacttggtcgtacaaagttgggataaatggt |
277 |
Q |
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| T |
24531986 |
aaactcatttcaattgaatatccagacaatgttttggatttatcaaaatctacttggtcatacaaagttgggatgaatggt |
24532066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 97 - 277
Target Start/End: Original strand, 24525213 - 24525394
Alignment:
| Q |
97 |
aggtaccaatattataagtttattaagtgttacagttggtcatgcaaattacggtgcgttctttgatatgcaagaaactggcattgttggggg-tcctgt |
195 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| | |||||| ||| |||| |||||||| |||||||||| ||||||||||| || ||| |
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| T |
24525213 |
aggtaccaatattataagtttattaagtgttacacttggtaaatcaaattgtagtgggttcattgatatgaaagaaactggtattgttggggggtcatgt |
24525312 |
T |
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| Q |
196 |
aaaactcttttcaatcgaaaatccaaacaatgttttggatttatcaaaatctacttggtcgtacaaagttgggataaatggt |
277 |
Q |
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|||||| ||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
24525313 |
gaaactcatttcaattgaatatccagacaatgttttggatttatcaaaatctacttggtcgtacaaagttgggatgaatggt |
24525394 |
T |
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