View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20916_low_9 (Length: 208)
Name: NF20916_low_9
Description: NF20916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20916_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 7 - 191
Target Start/End: Original strand, 37374540 - 37374724
Alignment:
| Q |
7 |
taacatacagcaaataggcttgccaccaagaggttggaattcctatgatgcattctcctggataatttctgaacaagaattcttacagaatgctcaaatt |
106 |
Q |
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| T |
37374540 |
taacatacagcaaataggcttgccaccaagaggttggaattcctatgatgcattttcctggataatttctgaacaagaattcttacagaatgctcaaatt |
37374639 |
T |
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| Q |
107 |
gtttctcggcgtctccgtgtgtttggatatgaggtatgaatactgaaaggaattatagtttatagatgtttttactttactgcat |
191 |
Q |
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| T |
37374640 |
gtttctcagcgtctccgtgtgtatggatatgaggtataaatactgaaaggaaatatagtttataaatgtttttactttactgcat |
37374724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 7 - 191
Target Start/End: Original strand, 37381876 - 37382060
Alignment:
| Q |
7 |
taacatacagcaaataggcttgccaccaagaggttggaattcctatgatgcattctcctggataatttctgaacaagaattcttacagaatgctcaaatt |
106 |
Q |
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| T |
37381876 |
taacatacagcaagtaggcttgccaccaagaggttggaattcctatgatgccttttcctggataatttctgaacaagagttcttacagaatgctgaaatt |
37381975 |
T |
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| Q |
107 |
gtttctcggcgtctccgtgtgtttggatatgaggtatgaatactgaaaggaattatagtttatagatgtttttactttactgcat |
191 |
Q |
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| T |
37381976 |
atttctcagcgtctccgtccacatggatacgaggtataaataccgaaacgaactatagcttatggatggtttcactttactgcat |
37382060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 29 - 184
Target Start/End: Original strand, 37359743 - 37359898
Alignment:
| Q |
29 |
ccaccaagaggttggaattcctatgatgcattctcctggataatttctgaacaagaattcttacagaatgctcaaattgtttctcggcgtctccgtgtgt |
128 |
Q |
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| T |
37359743 |
ccaccaagaggttggaattcctatgatgccttttcttggataatttctgaagaagaattcttacaaaatgctgaattagtttctcaacgtctccttgctc |
37359842 |
T |
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| Q |
129 |
ttggatatgaggtatgaatactgaaaggaattatagtttatagatgtttttacttt |
184 |
Q |
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| T |
37359843 |
acggatatgaggtataaatactgaaaggaactattatttgtggatgcttttacttt |
37359898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 29 - 184
Target Start/End: Complemental strand, 37368321 - 37368166
Alignment:
| Q |
29 |
ccaccaagaggttggaattcctatgatgcattctcctggataatttctgaacaagaattcttacagaatgctcaaattgtttctcggcgtctccgtgtgt |
128 |
Q |
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| T |
37368321 |
ccaccaagaggttggaattcctatgatgccttttcttggataatttctgaagaagaattcttacaaaatgctgaattagtttctcaacgtctccttgctc |
37368222 |
T |
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| Q |
129 |
ttggatatgaggtatgaatactgaaaggaattatagtttatagatgtttttacttt |
184 |
Q |
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| T |
37368221 |
acggatatgaggtataaatactgaaaggaactattatttgtggatgcttttacttt |
37368166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 26 - 154
Target Start/End: Complemental strand, 41230692 - 41230564
Alignment:
| Q |
26 |
ttgccaccaagaggttggaattcctatgatgcattctcctggataatttctgaacaagaattcttacagaatgctcaaattgtttctcggcgtctccgtg |
125 |
Q |
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|||||||||||||| ||||||||||| ||| |||| || |||||||| |||||| |||||||||||||||||||| |||| ||||||| |||||| | || |
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| T |
41230692 |
ttgccaccaagagggtggaattcctacgattcattttcgtggataatatctgaagaagaattcttacagaatgctgaaatagtttctcagcgtcttcatg |
41230593 |
T |
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| Q |
126 |
tgtttggatatgaggtatgaatactgaaa |
154 |
Q |
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| T |
41230592 |
ctcatggatatgaggtataaacactgaaa |
41230564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 123
Target Start/End: Original strand, 39243094 - 39243188
Alignment:
| Q |
29 |
ccaccaagaggttggaattcctatgatgcattctcctggataatttctgaacaagaattcttacagaatgctcaaattgtttctcggcgtctccg |
123 |
Q |
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| T |
39243094 |
ccaccaagaggttggaattcctatgattgcttttgctggataatttctgaacaagagttcttacaaagtgctcaaatagtttctcagcggctccg |
39243188 |
T |
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