View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20917_high_2 (Length: 556)
Name: NF20917_high_2
Description: NF20917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20917_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 11 - 515
Target Start/End: Complemental strand, 32251675 - 32251171
Alignment:
| Q |
11 |
caaaggagaacaatagtaggaaaaaacctgattagccacatcctctaaattgtaacccagcttcttcagagcctcagcataaggacctgagagttgtaaa |
110 |
Q |
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| T |
32251675 |
caaaggagaacaatagtaggaaaaaacctgattagccacatcctctaaattgtaacccagcttcttcagagcctcagcataaggacctgagagttgtaaa |
32251576 |
T |
|
| Q |
111 |
ttcccaattgcatttaacaatgccctacccttcacaattgggaaaaaatgtagtaatgaaaattaataatcatttgcaatgaaaatgacccgtgtttcat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32251575 |
ttcccaattgcatttaacaatgccctacccttcacaattgggaaaaaatgtagtaatgaaaattaataatcatttgcaatgaaaatgacccgtgtttcat |
32251476 |
T |
|
| Q |
211 |
aaaggaaacccaatatgaacctgtagatactccatagacatgtaataagcttgcttaacattaaccctctcataatattcatatgttgcattccaattta |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32251475 |
aaaggaaacccaatatgaacctgtagatactccatagacatgtaataagcttgcttaacattaaccctctcataatattcatatgttgcattccaattta |
32251376 |
T |
|
| Q |
311 |
tgataagggaatcacggacactctctgcagttgcaaagtaagccttactgggctcaaatttctcaggagaaaaagatgtggtgaactcagcatgatattt |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32251375 |
tgataagggaatcacggacactctctgcagttgcaaagtaagccttactgggctcaaatttctcaggagaaaaagatgtggtgaactcagcatgatattt |
32251276 |
T |
|
| Q |
411 |
tatgcttgaagctacagatgcagaatctgtaacaaattcatttgaagtggtgcctgcaagtgttaagcaataaggaattaatatttaggaccatatttgc |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32251275 |
tatgcttgaagctacagatgcagaatctgtaacaaattcatttgaagtggtgcctgcaagtgttaagcaataaggaattaatatttaggaccatatttgc |
32251176 |
T |
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| Q |
511 |
agaac |
515 |
Q |
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||||| |
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| T |
32251175 |
agaac |
32251171 |
T |
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