View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20917_low_3 (Length: 460)
Name: NF20917_low_3
Description: NF20917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20917_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 17 - 361
Target Start/End: Original strand, 30691046 - 30691390
Alignment:
| Q |
17 |
cacagaaaggaaaaaaggaatcatgaatcttactcctgtaatcttttgcggagcatataacgcaaatatgtatcagtaccatatgggctgatacccatgt |
116 |
Q |
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| T |
30691046 |
cacagaaaggaaaaaaggaatcttgaatcttactcctgtaatcttttgcggagcatataacgcaaatatgtatcagtaccatatgggctgatacccatgt |
30691145 |
T |
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| Q |
117 |
atttacacatatttaccaagcgaggcctgtttatccattttcgaaaccaaaagacatgttagcataacgatcatggaaatccagaatatgatattcataa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30691146 |
atttacacatatttaccaagcgaggcctgtttatccattttcgaaaccaaaagacatgttagcataacgatcatggaaatccagaatatgatattcgtaa |
30691245 |
T |
|
| Q |
217 |
cagaaaagcacaattagttgaacataaccaatggtagaaggatcaacctgctaatgttatccaaagtgaactcgtcattaaataatttggcaaagcctaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30691246 |
cagaaaagcacaattagttgaacataaccaatggtagaaggaccaacctgctaatgttatccaaagtgaactcgtcattaaataatttggcaaagcctaa |
30691345 |
T |
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| Q |
317 |
gatttcatcattagaaactcgagcacctgttctgacctgttccat |
361 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30691346 |
gatttcatcattagaaactcgagcacctgttctgacctgttccat |
30691390 |
T |
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