View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20917_low_4 (Length: 456)
Name: NF20917_low_4
Description: NF20917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20917_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 9 - 441
Target Start/End: Complemental strand, 47122823 - 47122375
Alignment:
| Q |
9 |
gagatgaaacatgtattttaaagataaattagcaaatgtagcttgtagcaaaagcgtctcttatatgaatgtgtgaatatcatttcttgaccattttgat |
108 |
Q |
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| T |
47122823 |
gagatgaaacatgtatattaaagataaattagcaaatgtagcttgtagcaaaagcgtctcttatatgaatgtgtgaatatcatttcttgaccattttgat |
47122724 |
T |
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| Q |
109 |
tataagtacttaggcttgcaaggtaattttcaatttgatgtggatttttaagtttttataagaaaataattttatttgagataaaacaatttgttaaagg |
208 |
Q |
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| T |
47122723 |
tataagtacttaggcttgcaaggtaattttcaatttgatgtggatttttaagtttttataagaaaataattttatttgagataaaacaatttgttaaagg |
47122624 |
T |
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| Q |
209 |
attatataaatttatccggaggatgatatttgagtcagagaagtatatggacactacagaatacaaataatatacttttaatcacttgtttagggactta |
308 |
Q |
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| T |
47122623 |
attatataaatttatccggaggatgacattggagtcagagaagtatatggacactacataatacaaataatatacttttagtcactcgtttaaggactta |
47122524 |
T |
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| Q |
309 |
aaaatgtannnnnnnnatttgtatggactacaaagtggatacaaagactaaaaacaaaattcactatatttgta-gaacccaaaactaattta------- |
400 |
Q |
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| T |
47122523 |
aaaatgtatttttgta--ttgtatggactacaaaatggatacaaagattaaaaacaaaattcactatatttgtaggaacccaaaactaatttaatcttat |
47122426 |
T |
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| Q |
401 |
----------accaaattatgtaaaagtagagatcaaaccaacatggtaat |
441 |
Q |
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| T |
47122425 |
ttaaaaaagtaccaaattatgtaaaagtagagatcaaaccaacatggtaat |
47122375 |
T |
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