View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20917_low_5 (Length: 450)
Name: NF20917_low_5
Description: NF20917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20917_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 32 - 436
Target Start/End: Complemental strand, 45594706 - 45594301
Alignment:
| Q |
32 |
ttcaagggatttcctacagtaactgaatgtgctgccatgtatgcaaagagtgaacatatgaccgtttaacagaaaaactgagtcttgcaacttactaatt |
131 |
Q |
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| T |
45594706 |
ttcaagggattgcctacagtaactgaatgtgcttccatgtatgcaaagagtgaacatatgaccgt--aacagaaaaacggagtcttgcaacttactaatt |
45594609 |
T |
|
| Q |
132 |
taatttaattcatgtttactacaagtaggtctcctaagatgcggcaaaagttgccggcttcggtggataaactatcttcgtcccggcatcaagcgtggct |
231 |
Q |
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| T |
45594608 |
taatttaatgcatgtttactacaagtaggtctcctaagatgcggtaaaagttgccggcttcggtggataaactatcttcgtcccggcatcaagcgtggct |
45594509 |
T |
|
| Q |
232 |
catttactaatgaagaagaaactactattattcaacttcatgccatgcttggcaacaggtacctcatcttagtcctaaaggctc---attcactcgtaac |
328 |
Q |
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| T |
45594508 |
catttactaatgaagaagaaactactattattcaacttcatgccatgcttggcaacaggtacctcatcttagtcctaaaggttcattattcactcgtaac |
45594409 |
T |
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| Q |
329 |
ttgcttagttcattcactttgcatgtaactgataactatgcaatctttcttttctaggtgggctgctacagcagctcaactaccaggaagaacagacaat |
428 |
Q |
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| T |
45594408 |
ttgcttagtacattcactttgcatgtaactgataactatgcaatctttcttttctaggtgggctgctatagcagctcaactaccaggaagaacagacaat |
45594309 |
T |
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| Q |
429 |
gagattaa |
436 |
Q |
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| T |
45594308 |
gagattaa |
45594301 |
T |
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