View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20917_low_6 (Length: 446)
Name: NF20917_low_6
Description: NF20917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20917_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 48 - 430
Target Start/End: Original strand, 39902245 - 39902627
Alignment:
| Q |
48 |
ctacctcaatattgcttttcaacctgtttggaggtatgatccatttgaccaaatctacccgtggccaagctacaatcgtgtttgagtcttgcaatctcat |
147 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39902245 |
ctacatcaatattgcttttcaacctgtttggaggtatgatccatttgaccaaatctacccgtggccaagctacaatcgtgtttgagtcttgcaatctcat |
39902344 |
T |
|
| Q |
148 |
ccattgccattgattgaggaatgcataatgttgatatatagtcctaacaacttcatcaatctcttctcaaagcttcaaactacaactttcccacaggttc |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39902345 |
ccattgccattgattgaggaatgcataatgttgatatatagtcctaacaacttcatcaatctcttctcaaagcttcaaactacaactttcccacaggttc |
39902444 |
T |
|
| Q |
248 |
acatacaccacatgctacactttatctgagacaataaatttgcaacactaaagaataatttccaagtgtcgattgaattatggaaagtcaaacatgatgc |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39902445 |
acatacaccacatgctacactttatctgagacatttaatttgcaacactaaagaataatttccaagtgtcgattgaattatggaaagtcaaacatgatgc |
39902544 |
T |
|
| Q |
348 |
caagcattttcacaataatccccacaacgaatgcaattatgtggacataggttttcattttaattggttttcttctcactttt |
430 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39902545 |
caagcattttcacaataatccccacaacgaatgcaattatgtggacataggttttcattttaattggttttcttctcactttt |
39902627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 39902113 - 39902147
Alignment:
| Q |
17 |
cttttagtgaacccatgagcctacgcctcttctac |
51 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
39902113 |
cttttagtgaacccatgagcctacgcctcttctac |
39902147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University