View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20917_low_7 (Length: 294)
Name: NF20917_low_7
Description: NF20917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20917_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 3e-88; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 99 - 279
Target Start/End: Complemental strand, 11585210 - 11585030
Alignment:
| Q |
99 |
gggacgccgaggttcaaacatgggaaatatatttaacaatttggttaccctttgcctcgacttagacttcaccaatattagaaattcaataactctttct |
198 |
Q |
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| T |
11585210 |
gggacgccgaggttcaaacatgggaagtatatttaacaatttggttaccctttgcctcgacttagacttcaccaatattagaaattcaatatctctttct |
11585111 |
T |
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| Q |
199 |
ttcgctgttaaatcttgcgaccgactaaagaatctgcaaatcaacaatcaggtgtgcttgggaatctttatttcatattat |
279 |
Q |
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| T |
11585110 |
ttcgctgttaaatcttgccaccgactaaagaatctgcaaatcaacaatcaggtgtgcttggaaatctttatttcatattat |
11585030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 142 - 239
Target Start/End: Original strand, 11143297 - 11143394
Alignment:
| Q |
142 |
gttaccctttgcctcgacttagacttcaccaatattagaaattcaataactctttctttcgctgttaaatcttgcgaccgactaaagaatctgcaaat |
239 |
Q |
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| T |
11143297 |
gttaccctttgcctcgacttagacttcacaaatattagaaatgcaatagctctttcttttgccattaagtcttgccatcaactaaagaatctacaaat |
11143394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 11585288 - 11585256
Alignment:
| Q |
20 |
ggttataattcttagaaatttaacaatgttgtg |
52 |
Q |
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| T |
11585288 |
ggttgtaattcttagaaatttaacaatgttgtg |
11585256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 29786366 - 29786311
Alignment:
| Q |
106 |
cgaggttcaaacatgggaaatatatttaacaatttggttaccctttgcctcgactt |
161 |
Q |
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| T |
29786366 |
cgaggttcaggcatgggaaatatatttaagcatttggtcactctttgcctcgactt |
29786311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 252
Target Start/End: Original strand, 30373195 - 30373330
Alignment:
| Q |
117 |
catgggaaatatatttaacaatttggttaccctttgcctcgacttagacttcaccaatattagaaattcaataactctttctttcgctgttaaatcttgc |
216 |
Q |
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| T |
30373195 |
catgagaagtatatttgacaatttggttaccctctgtctcgacctcgattttacaaataatagaaatgcaatagctctttcgtttgcacttaagtccagc |
30373294 |
T |
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| Q |
217 |
gaccgactaaagaatctgcaaatcaacaatcaggtg |
252 |
Q |
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| T |
30373295 |
catcaactaaagaatcttcaaataaataatcaggtg |
30373330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 29856807 - 29856859
Alignment:
| Q |
106 |
cgaggttcaaacatgggaaatatatttaacaatttggttaccctttgcctcga |
158 |
Q |
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|||||||| | |||| ||| ||| ||||| ||||||||||||||||||||||| |
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| T |
29856807 |
cgaggttctagcatgagaactatctttaaaaatttggttaccctttgcctcga |
29856859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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