View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20917_low_8 (Length: 251)
Name: NF20917_low_8
Description: NF20917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20917_low_8 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] scaffold0819 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 82 - 251
Target Start/End: Original strand, 10775300 - 10775470
Alignment:
| Q |
82 |
aactactatatctgcaac-ctgcaaattattaattgtgcaagaaattgtttcatgacatgctagtagttagaatacaaagtatatcatgccaaactttca |
180 |
Q |
| |
|
|||||||| |||||||| || |||||| |||||||| ||| |||||||||||| ||||||| |||||||||| |||||||||||||||||| ||||| |
|
|
| T |
10775300 |
aactactacatctgcaaatcttcaaattgttaattgtacaactgattgtttcatgagatgctaggagttagaatataaagtatatcatgccaaagtttca |
10775399 |
T |
|
| Q |
181 |
gtagttaatacgaacagaaaaatatatgcgttagtactcttatgcttctacaatgtagtgacttcttatga |
251 |
Q |
| |
|
||||||| |||||||||||| |||||| ||| ||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
10775400 |
gtagttactacgaacagaaatttatatgtattaatactcttatatttctacaatctagtgacttcttatga |
10775470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0819 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0819
Description:
Target: scaffold0819; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 82 - 251
Target Start/End: Complemental strand, 4752 - 4580
Alignment:
| Q |
82 |
aactactatatctgcaac-ctgcaaattattaattgtgcaagaaattgtttcatgacatgctagtagttagaatacaaagtatatcatgccaaactttca |
180 |
Q |
| |
|
|||||||| |||||||| ||||||||| |||||||| |||| |||||||||||| ||||||| |||||||||| |||||||||||||||||| ||||| |
|
|
| T |
4752 |
aactactacatctgcaaatctgcaaattgttaattgtacaagtgattgtttcatgagatgctaggagttagaatataaagtatatcatgccaaagtttca |
4653 |
T |
|
| Q |
181 |
gtagttaatacgaacagaaaaatatatgcgtta--gtactcttatgcttctacaatgtagtgacttcttatga |
251 |
Q |
| |
|
||||||| |||||||||||| |||||| ||| ||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
4652 |
gtagttactacgaacagaaatttatatgtattaatatactcttatatttctacaatctagtgacttcttatga |
4580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 21856013 - 21856050
Alignment:
| Q |
24 |
aaggtaagggcattattccgtacaatcatgtaggtcat |
61 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21856013 |
aaggtaagggcattattccgtacaatcatgtaggtcat |
21856050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University